Possible Memory Leak with Heavy Insert InnoDB Config

Asked by sagehen03

I built mysql from the source distribution available here: http://www.percona.com/mysql/5.0.67-b7/source/ and have it running on an Ubuntu 8.04 Hardy Amazon EC2 m1.large machine, with all the data files on Amazon EBS volume. The application that is using the database performs a fairly large volume of inserts into a normalized schema, about 7 million insert per day. What I've noticed is as those inserts are occurring MySQL's memory consumption steadily increases until the machine runs out of RAM and shuts down. I'm including the output from mysqlreport, and the output of show variables, and the output of free. I recently increased the swap file size which means the app runs longer, but it looks like it's destined to run out of memory as well. I'm not sure if this is a bug in this release or if I misconfigured something during the build. I appreciate any help you can offer, and I really appreciate Percona's contributions to the community.

************** mysqlreport *************************

MySQL 5.0.67-log uptime 0 4:24:52 Wed Dec 3 19:11:42 2008

__ Key _________________________________________________________________
Buffer used 17.00k of 8.00M %Used: 0.21
  Current 1.46M %Usage: 18.25
Write hit 100.00%
Read hit 99.69%

__ Questions ___________________________________________________________
Total 13.67M 860.0/s
  DMS 10.34M 650.7/s %Total: 75.66
  Com_ 2.94M 184.9/s 21.50
  QC Hits 397.21k 25.0/s 2.91
  -Unknown 12.14k 0.8/s 0.09
  COM_QUIT 2.22k 0.1/s 0.02
Slow 1 s 17.42k 1.1/s 0.13 %DMS: 0.17 Log: ON
DMS 10.34M 650.7/s 75.66
  INSERT 8.22M 517.4/s 60.16 79.52
  UPDATE 1.53M 96.3/s 11.20 14.81
  SELECT 578.32k 36.4/s 4.23 5.59
  DELETE 8.77k 0.6/s 0.06 0.08
  REPLACE 0 0/s 0.00 0.00
Com_ 2.94M 184.9/s 21.50
  show_warnin 2.91M 183.3/s 21.32
  admin_comma 12.07k 0.8/s 0.09
  set_option 8.80k 0.6/s 0.06

__ SELECT and Sort _____________________________________________________
Scan 8.75k 0.6/s %SELECT: 1.51
Range 0 0/s 0.00
Full join 0 0/s 0.00
Range check 0 0/s 0.00
Full rng join 0 0/s 0.00
Sort scan 171.67k 10.8/s
Sort range 2.40k 0.2/s
Sort mrg pass 3 0.0/s

__ Query Cache _________________________________________________________
Memory usage 22.32k of 100.00M %Used: 0.02
Block Fragmnt 16.67%
Hits 397.21k 25.0/s
Inserts 551.40k 34.7/s
Insrt:Prune 551.40k:1 34.7/s
Hit:Insert 0.72:1

__ Table Locks _________________________________________________________
Waited 0 0/s %Total: 0.00
Immediate 10.35M 651.2/s

__ Tables ______________________________________________________________
Open 64 of 64 %Cache: 100.00
Opened 2.99k 0.2/s

__ Connections _________________________________________________________
Max used 75 of 250 %Max: 30.00
Total 2.23k 0.1/s

__ Created Temp ________________________________________________________
Disk table 1.13k 0.1/s
Table 8.56k 0.5/s Size: 32.0M
File 1.33k 0.1/s

__ Threads _____________________________________________________________
Running 25 of 41
Cached 4 of 8 %Hit: 72.13
Created 621 0.0/s
Slow 0 0/s

__ Aborted _____________________________________________________________
Clients 6 0.0/s
Connects 0 0/s

__ Bytes _______________________________________________________________
Sent 960.99M 60.5k/s
Received 6.88G 433.0k/s

__ InnoDB Buffer Pool __________________________________________________
Usage 4.00G of 4.00G %Used: 100.00
Read hit 99.95%
Pages
  Free 0 %Total: 0.00
  Data 256.62k 97.89 %Drty: 1.05
  Misc 5527 2.11
  Latched 15 0.01
Reads 506.70M 31.9k/s
  From file 264.03k 16.6/s 0.05
  Ahead Rnd 1386 0.1/s
  Ahead Sql 161 0.0/s
Writes 82.48M 5.2k/s
Flushes 4.52M 284.5/s
Wait Free 19 0.0/s

__ InnoDB Lock _________________________________________________________
Waits 54 0.0/s
Current 0
Time acquiring
  Total 19878 ms
  Average 368 ms
  Max 3817 ms

__ InnoDB Data, Pages, Rows ____________________________________________
Data
  Reads 367.87k 23.1/s
  Writes 3.50M 220.1/s
  fsync 385.69k 24.3/s
  Pending
    Reads 0
    Writes 0
    fsync 0

Pages
  Created 516.30k 32.5/s
  Read 382.93k 24.1/s
  Written 4.52M 284.5/s

Rows
  Deleted 64.40k 4.1/s
  Inserted 8.21M 516.8/s
  Read 213.64M 13.4k/s
  Updated 650.46k 40.9/s

***************************** show variables ******************************
Variable_name Value
auto_increment_increment 1
auto_increment_offset 1
automatic_sp_privileges ON
back_log 50
basedir /usr/local/
binlog_cache_size 32768
bulk_insert_buffer_size 8388608
character_set_client latin1
character_set_connection latin1
character_set_database latin1
character_set_filesystem binary
character_set_results latin1
character_set_server latin1
character_set_system utf8
character_sets_dir /usr/local/share/mysql/charsets/
collation_connection latin1_swedish_ci
collation_database latin1_swedish_ci
collation_server latin1_swedish_ci
completion_type 0
concurrent_insert 1
connect_timeout 10
datadir /vol/data/
date_format %Y-%m-%d
datetime_format %Y-%m-%d %H:%i:%s
default_week_format 0
delay_key_write ON
delayed_insert_limit 100
delayed_insert_timeout 300
delayed_queue_size 1000
div_precision_increment 4
keep_files_on_create OFF
engine_condition_pushdown OFF
expire_logs_days 3
flush OFF
flush_time 0
ft_boolean_syntax + -><()~*:""&|
ft_max_word_len 84
ft_min_word_len 4
ft_query_expansion_limit 20
ft_stopword_file (built-in)
group_concat_max_len 1024
have_archive NO
have_bdb NO
have_blackhole_engine NO
have_compress YES
have_crypt YES
have_csv NO
have_dynamic_loading YES
have_example_engine NO
have_federated_engine NO
have_geometry YES
have_innodb YES
have_isam NO
have_merge_engine YES
have_ndbcluster NO
have_openssl NO
have_ssl NO
have_query_cache YES
have_raid NO
have_rtree_keys YES
have_symlink YES
hostname ip-10-251-22-47
init_connect
init_file
init_slave
innodb_additional_mem_pool_size 1048576
innodb_autoextend_increment 8
innodb_buffer_pool_awe_mem_mb 0
innodb_buffer_pool_size 4294967296
innodb_checksums ON
innodb_commit_concurrency 0
innodb_concurrency_tickets 500
innodb_data_file_path ibdata1:2G;ibdata2:2G:autoextend
innodb_data_home_dir /vol/data/
innodb_adaptive_hash_index ON
innodb_doublewrite ON
innodb_fast_shutdown 1
innodb_file_io_threads 4
innodb_file_per_table ON
innodb_flush_log_at_trx_commit 0
innodb_show_locks_held 10
innodb_show_verbose_locks 0
innodb_flush_method O_DIRECT
innodb_force_recovery 0
innodb_lock_wait_timeout 75
innodb_locks_unsafe_for_binlog OFF
innodb_log_arch_dir
innodb_log_archive OFF
innodb_log_buffer_size 5242880
innodb_log_file_size 5242880
innodb_log_files_in_group 2
innodb_log_group_home_dir /vol/innodb_log/
innodb_max_dirty_pages_pct 90
innodb_max_purge_lag 0
innodb_mirrored_log_groups 1
innodb_open_files 300
innodb_rollback_on_timeout OFF
innodb_support_xa ON
innodb_sync_spin_loops 20
innodb_table_locks ON
innodb_thread_concurrency 8
innodb_thread_sleep_delay 10000
innodb_io_capacity 100
innodb_read_ahead 3
innodb_adaptive_checkpoint 0
innodb_read_io_threads 1
innodb_write_io_threads 1
innodb_io_pattern_trace 0
innodb_io_pattern_trace_running 0
innodb_io_pattern_size_limit 0
interactive_timeout 28800
join_buffer_size 131072
key_buffer_size 8384512
key_cache_age_threshold 300
key_cache_block_size 1024
key_cache_division_limit 100
language /usr/local/share/mysql/english/
large_files_support ON
large_page_size 0
large_pages OFF
lc_time_names en_US
license GPL
local_infile ON
locked_in_memory OFF
log OFF
log_bin ON
log_bin_trust_function_creators OFF
log_error /vol/logs/error.log
log_queries_not_using_indexes ON
log_slave_updates OFF
log_slow_queries ON
log_slow_filter
log_slow_rate_limit 1
log_slow_verbosity microtime
log_warnings 1
long_query_time 1.000000
low_priority_updates OFF
lower_case_file_system OFF
lower_case_table_names 0
max_allowed_packet 1048576
max_binlog_cache_size 18446744073709547520
max_binlog_size 1073741824
max_connect_errors 10
max_connections 250
max_delayed_threads 20
max_error_count 64
max_heap_table_size 16777216
max_insert_delayed_threads 20
max_join_size 18446744073709551615
max_length_for_sort_data 1024
max_prepared_stmt_count 16382
max_relay_log_size 0
max_seeks_for_key 18446744073709551615
max_sort_length 1024
max_sp_recursion_depth 0
max_tmp_tables 32
max_user_connections 0
max_write_lock_count 18446744073709551615
min_examined_row_limit 0
multi_range_count 256
myisam_data_pointer_size 6
myisam_max_sort_file_size 9223372036853727232
myisam_recover_options OFF
myisam_repair_threads 1
myisam_sort_buffer_size 8388608
myisam_stats_method nulls_unequal
net_buffer_length 16384
net_read_timeout 30
net_retry_count 10
net_write_timeout 60
new OFF
old_passwords OFF
open_files_limit 1250
optimizer_prune_level 1
optimizer_search_depth 62
pid_file /vol/data/ip-10-251-22-47.pid
plugin_dir
port 3306
preload_buffer_size 32768
profiling OFF
profiling_history_size 15
protocol_version 10
query_alloc_block_size 8192
query_cache_limit 1048576
query_cache_min_res_unit 4096
query_cache_size 104857600
query_cache_type ON
query_cache_wlock_invalidate OFF
query_prealloc_size 8192
range_alloc_block_size 4096
read_buffer_size 131072
read_only OFF
read_rnd_buffer_size 262144
relay_log
relay_log_index
relay_log_info_file relay-log.info
relay_log_purge ON
relay_log_space_limit 0
rpl_recovery_rank 0
secure_auth OFF
secure_file_priv
server_id 1
skip_external_locking ON
skip_networking OFF
skip_show_database OFF
slave_compressed_protocol OFF
slave_load_tmpdir /tmp/
slave_net_timeout 3600
slave_skip_errors OFF
slave_transaction_retries 10
slow_launch_time 2
socket /tmp/mysql.sock
sort_buffer_size 2097144
sql_big_selects ON
sql_mode
sql_notes ON
sql_warnings OFF
ssl_ca
ssl_capath
ssl_cert
ssl_cipher
ssl_key
storage_engine MyISAM
sync_binlog 0
sync_frm ON
system_time_zone UTC
table_cache 64
table_lock_wait_timeout 50
table_type MyISAM
thread_cache_size 8
thread_stack 262144
time_format %H:%i:%s
time_zone SYSTEM
timed_mutexes OFF
tmp_table_size 33554432
tmpdir /tmp/
transaction_alloc_block_size 8192
transaction_prealloc_size 4096
tx_isolation REPEATABLE-READ
updatable_views_with_limit YES
version 5.0.67-log
version_comment Source distribution
version_compile_machine x86_64
version_compile_os unknown-linux-gnu
wait_timeout 28800

***************** free *******************************
             total used free shared buffers cached
Mem: 7872040 7857036 15004 0 70176 573416
-/+ buffers/cache: 7213444 658596
Swap: 10485752 3082304 7403448

Question information

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Revision history for this message
Vadim Tkachenko (vadim-tk) said :
#1

Hello,

We tried to fix possible memory in build10, please try it when it is available (should be very soon).

Can you help with this problem?

Provide an answer of your own, or ask sagehen03 for more information if necessary.

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