Error while installing pythia8

Asked by Nicola Forti

I was trying to install pythia8 in mg5_aMC3.4.2 but this is what happened

MG5_aMC>install pythia8
   You are installing 'pythia8', please cite ref(s): arXiv:1410.3012.
Downloading the HEPToolInstaller at:
   http://madgraph.mi.infn.it//Downloads/HEPToolsInstaller/HEPToolsInstaller_V168.tar.gz
Pythia8 will be linked to LHAPDF v6.
Now installing Pythia8. Be patient...
/home/nicola/MG5_aMC_v3.4.2/MG5_aMC_v3_4_2/HEPTools/HEPToolsInstallers/HEPToolInstaller.py:15: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
  from distutils.version import LooseVersion, StrictVersion
Detected 'pythia8' missing dependency: 'hepmc'. Will install it now.
Fetching data with command:
  wget --no-check-certificate http://hepmc.web.cern.ch/hepmc/releases/hepmc2.06.09.tgz
--2023-11-16 17:20:48-- http://hepmc.web.cern.ch/hepmc/releases/hepmc2.06.09.tgz
Resolving hepmc.web.cern.ch (hepmc.web.cern.ch)... 188.184.74.207, 2001:1458:d00:4e::100:3c0
Connecting to hepmc.web.cern.ch (hepmc.web.cern.ch)|188.184.74.207|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 3802048 (3.6M) [application/x-tar]
Saving to: ‘hepmc2.06.09.tgz’

hepmc2.06.09.tgz 100%[=================================================>] 3.62M 1.74MB/s in 2.1s

2023-11-16 17:20:51 (1.74 MB/s) - ‘hepmc2.06.09.tgz’ saved [3802048/3802048]

Installing tool 'hepmc'...
    > Follow the installation progress by running the command below in a separate terminal)
    > tail -f /home/nicola/MG5_aMC_v3.4.2/MG5_aMC_v3_4_2/HEPTools/hepmc/hepmc_install.log
    > A problem occured during the installation of dependency 'hepmc'.
    > Content of the installation log file '/home/nicola/MG5_aMC_v3.4.2/MG5_aMC_v3_4_2/HEPTools/hepmc/hepmc_install.log':

 Set environment variables
 Unpack HEPMC
hepmc2.06.09/
hepmc2.06.09/.cvsignore
hepmc2.06.09/AUTHORS
hepmc2.06.09/CMakeLists.txt
hepmc2.06.09/COPYING
hepmc2.06.09/ChangeLog
hepmc2.06.09/HepMC/
hepmc2.06.09/HepMC/.cvsignore
hepmc2.06.09/HepMC/CMakeLists.txt
hepmc2.06.09/HepMC/CompareGenEvent.h
hepmc2.06.09/HepMC/Flow.h
hepmc2.06.09/HepMC/GenCrossSection.h
hepmc2.06.09/HepMC/GenEvent.h
hepmc2.06.09/HepMC/GenParticle.h
hepmc2.06.09/HepMC/GenRanges.h
hepmc2.06.09/HepMC/GenVertex.h
hepmc2.06.09/HepMC/HEPEVT_Wrapper.h
hepmc2.06.09/HepMC/HeavyIon.h
hepmc2.06.09/HepMC/HepMCDefs.h
hepmc2.06.09/HepMC/HerwigWrapper.h
hepmc2.06.09/HepMC/IO_AsciiParticles.h
hepmc2.06.09/HepMC/IO_BaseClass.h
hepmc2.06.09/HepMC/IO_Exception.h
hepmc2.06.09/HepMC/IO_GenEvent.h
hepmc2.06.09/HepMC/IO_HEPEVT.h
hepmc2.06.09/HepMC/IO_HERWIG.h
hepmc2.06.09/HepMC/IteratorRange.h
hepmc2.06.09/HepMC/Makefile.am
hepmc2.06.09/HepMC/PdfInfo.h
hepmc2.06.09/HepMC/Polarization.h
hepmc2.06.09/HepMC/PythiaWrapper.h
hepmc2.06.09/HepMC/PythiaWrapper6_4.h
hepmc2.06.09/HepMC/PythiaWrapper6_4_WIN32.h
hepmc2.06.09/HepMC/SearchVector.h
hepmc2.06.09/HepMC/SimpleVector.h
hepmc2.06.09/HepMC/SimpleVector.icc
hepmc2.06.09/HepMC/StreamHelpers.h
hepmc2.06.09/HepMC/StreamInfo.h
hepmc2.06.09/HepMC/TempParticleMap.h
hepmc2.06.09/HepMC/Units.h
hepmc2.06.09/HepMC/Version.h
hepmc2.06.09/HepMC/WeightContainer.h
hepmc2.06.09/HepMC/enable_if.h
hepmc2.06.09/HepMC/is_arithmetic.h
hepmc2.06.09/HepMC/defs.h.in
hepmc2.06.09/HepMC/Makefile.in
hepmc2.06.09/INSTALL
hepmc2.06.09/INSTALL.autoconf
hepmc2.06.09/INSTALL.cmake
hepmc2.06.09/Makefile.am
hepmc2.06.09/NEWS
hepmc2.06.09/README
hepmc2.06.09/ReadMe.cygwin
hepmc2.06.09/bootstrap
hepmc2.06.09/cmake/
hepmc2.06.09/cmake/Modules/
hepmc2.06.09/cmake/Modules/HepMCUseCpack.cmake
hepmc2.06.09/cmake/Modules/HepMCVariables.cmake
hepmc2.06.09/configure.ac
hepmc2.06.09/doc/
hepmc2.06.09/doc/.cvsignore
hepmc2.06.09/doc/CMakeLists.txt
hepmc2.06.09/doc/HepMC2_user_manual.tex
hepmc2.06.09/doc/HepMC_basic_properties.eps
hepmc2.06.09/doc/Makefile.am
hepmc2.06.09/doc/buildDoc.sh
hepmc2.06.09/doc/buildDoxygen.sh
hepmc2.06.09/doc/doxygen-template
hepmc2.06.09/doc/doxygen.conf
hepmc2.06.09/doc/graph_interpretation.eps
hepmc2.06.09/doc/html.sty
hepmc2.06.09/doc/physicist_visualization.eps
hepmc2.06.09/doc/Makefile.in
hepmc2.06.09/examples/
hepmc2.06.09/examples/.cvsignore
hepmc2.06.09/examples/CMakeLists.txt
hepmc2.06.09/examples/GNUmakefile.example.in
hepmc2.06.09/examples/Makefile.am
hepmc2.06.09/examples/VectorConversion.h
hepmc2.06.09/examples/example_BuildEventFromScratch.cc
hepmc2.06.09/examples/example_EventSelection.cc
hepmc2.06.09/examples/example_UsingIterators.cc
hepmc2.06.09/examples/example_UsingIterators.txt
hepmc2.06.09/examples/example_VectorConversion.cc
hepmc2.06.09/examples/fio/
hepmc2.06.09/examples/fio/CMakeLists.txt
hepmc2.06.09/examples/fio/GNUmakefile.example.in
hepmc2.06.09/examples/fio/Makefile.am
hepmc2.06.09/examples/fio/PythiaHelper.h
hepmc2.06.09/examples/fio/example_MyHerwig.cc
hepmc2.06.09/examples/fio/example_MyPythia.cc
hepmc2.06.09/examples/fio/example_MyPythiaOnlyToHepMC.cc
hepmc2.06.09/examples/fio/example_PythiaStreamIO.cc
hepmc2.06.09/examples/fio/initPythia.cc
hepmc2.06.09/examples/fio/initpydata.f
hepmc2.06.09/examples/fio/testHerwigCopies.cc
hepmc2.06.09/examples/fio/testPythiaCopies.cc
hepmc2.06.09/examples/fio/Makefile.in
hepmc2.06.09/examples/list_of_examples.cc
hepmc2.06.09/examples/pythia8/
hepmc2.06.09/examples/pythia8/CMakeLists.txt
hepmc2.06.09/examples/pythia8/GNUmakefile.example.in
hepmc2.06.09/examples/pythia8/Makefile.am
hepmc2.06.09/examples/pythia8/README
hepmc2.06.09/examples/pythia8/config.csh.in
hepmc2.06.09/examples/pythia8/config.sh.in
hepmc2.06.09/examples/pythia8/main31.cc
hepmc2.06.09/examples/pythia8/main32.cc
hepmc2.06.09/examples/pythia8/main32.cmnd
hepmc2.06.09/examples/pythia8/Makefile.in
hepmc2.06.09/examples/Makefile.in
hepmc2.06.09/fio/
hepmc2.06.09/fio/.cvsignore
hepmc2.06.09/fio/CMakeLists.txt
hepmc2.06.09/fio/HEPEVT_Wrapper.cc
hepmc2.06.09/fio/HerwigWrapper.cc
hepmc2.06.09/fio/IO_HEPEVT.cc
hepmc2.06.09/fio/IO_HERWIG.cc
hepmc2.06.09/fio/Makefile.am
hepmc2.06.09/fio/Makefile.in
hepmc2.06.09/src/
hepmc2.06.09/src/.cvsignore
hepmc2.06.09/src/CMakeLists.txt
hepmc2.06.09/src/CompareGenEvent.cc
hepmc2.06.09/src/Flow.cc
hepmc2.06.09/src/GenCrossSection.cc
hepmc2.06.09/src/GenEvent.cc
hepmc2.06.09/src/GenEventStreamIO.cc
hepmc2.06.09/src/GenParticle.cc
hepmc2.06.09/src/GenRanges.cc
hepmc2.06.09/src/GenVertex.cc
hepmc2.06.09/src/HeavyIon.cc
hepmc2.06.09/src/IO_AsciiParticles.cc
hepmc2.06.09/src/IO_GenEvent.cc
hepmc2.06.09/src/Makefile.am
hepmc2.06.09/src/PdfInfo.cc
hepmc2.06.09/src/Polarization.cc
hepmc2.06.09/src/SearchVector.cc
hepmc2.06.09/src/StreamHelpers.cc
hepmc2.06.09/src/StreamInfo.cc
hepmc2.06.09/src/Units.cc.in
hepmc2.06.09/src/WeightContainer.cc
hepmc2.06.09/src/filterEvent.cc
hepmc2.06.09/src/Makefile.in
hepmc2.06.09/test/
hepmc2.06.09/test/.cvsignore
hepmc2.06.09/test/CMakeLists.txt
hepmc2.06.09/test/IsGoodEvent.h
hepmc2.06.09/test/Makefile.am
hepmc2.06.09/test/list_of_examples.cc
hepmc2.06.09/test/testCrossSection.dat
hepmc2.06.09/test/testCrossSection.output
hepmc2.06.09/test/testFlow.cc
hepmc2.06.09/test/testFlow.output
hepmc2.06.09/test/testFlow.sh.in
hepmc2.06.09/test/testHepMC.cc.in
hepmc2.06.09/test/testHepMC.dat
hepmc2.06.09/test/testHepMC.output
hepmc2.06.09/test/testHepMC.sh.in
hepmc2.06.09/test/testHepMCIteration.cc.in
hepmc2.06.09/test/testHepMCIteration.dat
hepmc2.06.09/test/testHepMCIteration.h
hepmc2.06.09/test/testHepMCIteration.sh.in
hepmc2.06.09/test/testHepMCMethods.cc
hepmc2.06.09/test/testHepMCMethods.h
hepmc2.06.09/test/testHepMCParticle.output
hepmc2.06.09/test/testHepMCVarious.input
hepmc2.06.09/test/testHepMCVarious.output
hepmc2.06.09/test/testIOGenEvent.input
hepmc2.06.09/test/testMass.cc.in
hepmc2.06.09/test/testMass.sh.in
hepmc2.06.09/test/testMass1.dat
hepmc2.06.09/test/testMultipleCopies.cc.in
hepmc2.06.09/test/testPolarization.cc
hepmc2.06.09/test/testPolarization.sh.in
hepmc2.06.09/test/testPrintBug.cc
hepmc2.06.09/test/testUnits.cc
hepmc2.06.09/test/testPrintBug.output
hepmc2.06.09/test/testPrintBug.sh.in
hepmc2.06.09/test/testSimpleVector.cc
hepmc2.06.09/test/testStreamIO.cc.in
hepmc2.06.09/test/testStreamIO.output
hepmc2.06.09/test/testStreamIO.sh.in
hepmc2.06.09/test/testStreamIOVarious.dat
hepmc2.06.09/test/testStreamIOVarious.output
hepmc2.06.09/test/testWeights.cc
hepmc2.06.09/test/testWithWeight.dat
hepmc2.06.09/test/testWithWeight.output
hepmc2.06.09/test/Makefile.in
hepmc2.06.09/autom4te.cache/
hepmc2.06.09/autom4te.cache/requests
hepmc2.06.09/autom4te.cache/output.0
hepmc2.06.09/autom4te.cache/traces.0
hepmc2.06.09/autom4te.cache/output.1
hepmc2.06.09/autom4te.cache/traces.1
hepmc2.06.09/autom4te.cache/output.2
hepmc2.06.09/autom4te.cache/traces.2
hepmc2.06.09/aclocal.m4
hepmc2.06.09/ltmain.sh
hepmc2.06.09/configure
hepmc2.06.09/config.guess
hepmc2.06.09/config.sub
hepmc2.06.09/install-sh
hepmc2.06.09/missing
hepmc2.06.09/depcomp
hepmc2.06.09/Makefile.in
 Enter HEPMC directory
 Copying the hacked files 'WeightContainer.cc' and 'WeightContainer.h' to be capable of writing named weights in HepMC.
 The autotools configure script already present; there is no need to run autoreconf manually.
 Configure HEPMC
./configure --prefix=/home/nicola/MG5_aMC_v3.4.2/MG5_aMC_v3_4_2/HEPTools/hepmc --with-momentum=GEV --with-length=MM
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... gcc3
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking whether make sets $(MAKE)... (cached) yes
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) gcc3
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for stdint.h... (cached) yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for ptrdiff_t... yes
checking for ANSI C header files... (cached) yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating HepMC/Makefile
config.status: creating doc/Makefile
config.status: creating examples/Makefile
config.status: creating examples/fio/Makefile
config.status: creating examples/pythia8/Makefile
config.status: creating fio/Makefile
config.status: creating src/Makefile
config.status: creating src/Units.cc
config.status: creating test/Makefile
config.status: creating test/testHepMC.cc
config.status: creating test/testMass.cc
config.status: creating test/testHepMCIteration.cc
config.status: creating test/testMultipleCopies.cc
config.status: creating test/testStreamIO.cc
config.status: creating examples/GNUmakefile.example
config.status: creating examples/fio/GNUmakefile.example
config.status: creating examples/pythia8/config.csh
config.status: creating examples/pythia8/config.sh
config.status: creating examples/pythia8/GNUmakefile.example
config.status: creating test/testHepMC.sh
config.status: creating test/testFlow.sh
config.status: creating test/testMass.sh
config.status: creating test/testHepMCIteration.sh
config.status: creating test/testPolarization.sh
config.status: creating test/testPrintBug.sh
config.status: creating test/testStreamIO.sh
config.status: creating HepMC/defs.h
config.status: executing depfiles commands
config.status: executing libtool commands
 Compile HEPMC
Making all in HepMC
make[1]: Entering directory '/tmp/tmpkmrzavya/hepmc2.06.09/HepMC'
make all-am
make[2]: Entering directory '/tmp/tmpkmrzavya/hepmc2.06.09/HepMC'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/tmp/tmpkmrzavya/hepmc2.06.09/HepMC'
make[1]: Leaving directory '/tmp/tmpkmrzavya/hepmc2.06.09/HepMC'
Making all in src
make[1]: Entering directory '/tmp/tmpkmrzavya/hepmc2.06.09/src'
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT CompareGenEvent.lo -MD -MP -MF .deps/CompareGenEvent.Tpo -c -o CompareGenEvent.lo CompareGenEvent.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT CompareGenEvent.lo -MD -MP -MF .deps/CompareGenEvent.Tpo -c CompareGenEvent.cc -fPIC -DPIC -o .libs/CompareGenEvent.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT CompareGenEvent.lo -MD -MP -MF .deps/CompareGenEvent.Tpo -c CompareGenEvent.cc -o CompareGenEvent.o >/dev/null 2>&1
mv -f .deps/CompareGenEvent.Tpo .deps/CompareGenEvent.Plo
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT Flow.lo -MD -MP -MF .deps/Flow.Tpo -c -o Flow.lo Flow.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT Flow.lo -MD -MP -MF .deps/Flow.Tpo -c Flow.cc -fPIC -DPIC -o .libs/Flow.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT Flow.lo -MD -MP -MF .deps/Flow.Tpo -c Flow.cc -o Flow.o >/dev/null 2>&1
mv -f .deps/Flow.Tpo .deps/Flow.Plo
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT GenEvent.lo -MD -MP -MF .deps/GenEvent.Tpo -c -o GenEvent.lo GenEvent.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT GenEvent.lo -MD -MP -MF .deps/GenEvent.Tpo -c GenEvent.cc -fPIC -DPIC -o .libs/GenEvent.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT GenEvent.lo -MD -MP -MF .deps/GenEvent.Tpo -c GenEvent.cc -o GenEvent.o >/dev/null 2>&1
mv -f .deps/GenEvent.Tpo .deps/GenEvent.Plo
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT GenEventStreamIO.lo -MD -MP -MF .deps/GenEventStreamIO.Tpo -c -o GenEventStreamIO.lo GenEventStreamIO.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT GenEventStreamIO.lo -MD -MP -MF .deps/GenEventStreamIO.Tpo -c GenEventStreamIO.cc -fPIC -DPIC -o .libs/GenEventStreamIO.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT GenEventStreamIO.lo -MD -MP -MF .deps/GenEventStreamIO.Tpo -c GenEventStreamIO.cc -o GenEventStreamIO.o >/dev/null 2>&1
mv -f .deps/GenEventStreamIO.Tpo .deps/GenEventStreamIO.Plo
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT GenParticle.lo -MD -MP -MF .deps/GenParticle.Tpo -c -o GenParticle.lo GenParticle.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT GenParticle.lo -MD -MP -MF .deps/GenParticle.Tpo -c GenParticle.cc -fPIC -DPIC -o .libs/GenParticle.o
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/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT IO_AsciiParticles.lo -MD -MP -MF .deps/IO_AsciiParticles.Tpo -c -o IO_AsciiParticles.lo IO_AsciiParticles.cc
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/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT IO_GenEvent.lo -MD -MP -MF .deps/IO_GenEvent.Tpo -c -o IO_GenEvent.lo IO_GenEvent.cc
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/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT PdfInfo.lo -MD -MP -MF .deps/PdfInfo.Tpo -c -o PdfInfo.lo PdfInfo.cc
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/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT StreamInfo.lo -MD -MP -MF .deps/StreamInfo.Tpo -c -o StreamInfo.lo StreamInfo.cc
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/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT Units.lo -MD -MP -MF .deps/Units.Tpo -c -o Units.lo Units.cc
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/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT WeightContainer.lo -MD -MP -MF .deps/WeightContainer.Tpo -c -o WeightContainer.lo WeightContainer.cc
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT WeightContainer.lo -MD -MP -MF .deps/WeightContainer.Tpo -c WeightContainer.cc -o WeightContainer.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX --mode=link g++ -ansi -pedantic -Wall -g -O2 -version-info 4:0:0 -o libHepMC.la -rpath /home/nicola/MG5_aMC_v3.4.2/MG5_aMC_v3_4_2/HEPTools/hepmc/lib CompareGenEvent.lo Flow.lo GenEvent.lo GenEventStreamIO.lo GenParticle.lo GenCrossSection.lo GenVertex.lo GenRanges.lo HeavyIon.lo IO_AsciiParticles.lo IO_GenEvent.lo PdfInfo.lo Polarization.lo SearchVector.lo StreamHelpers.lo StreamInfo.lo Units.lo WeightContainer.lo
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libtool: link: ar cru .libs/libHepMC.a CompareGenEvent.o Flow.o GenEvent.o GenEventStreamIO.o GenParticle.o GenCrossSection.o GenVertex.o GenRanges.o HeavyIon.o IO_AsciiParticles.o IO_GenEvent.o PdfInfo.o Polarization.o SearchVector.o StreamHelpers.o StreamInfo.o Units.o WeightContainer.o
ar: `u' modifier ignored since `D' is the default (see `U')
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/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT HEPEVT_Wrapper.lo -MD -MP -MF .deps/HEPEVT_Wrapper.Tpo -c -o HEPEVT_Wrapper.lo HEPEVT_Wrapper.cc
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/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT IO_HERWIG.lo -MD -MP -MF .deps/IO_HERWIG.Tpo -c -o IO_HERWIG.lo IO_HERWIG.cc
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/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../HepMC -I.. -I.. -ansi -pedantic -Wall -g -O2 -MT HerwigWrapper.lo -MD -MP -MF .deps/HerwigWrapper.Tpo -c -o HerwigWrapper.lo HerwigWrapper.cc
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/bin/bash ../libtool --tag=CXX --mode=link g++ -ansi -pedantic -Wall -g -O2 -version-info 4:0:0 -o libHepMCfio.la -rpath /home/nicola/MG5_aMC_v3.4.2/MG5_aMC_v3_4_2/HEPTools/hepmc/lib HEPEVT_Wrapper.lo IO_HEPEVT.lo IO_HERWIG.lo HerwigWrapper.lo
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 Install HEPMC
Making install in HepMC
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test -z "/home/nicola/MG5_aMC_v3.4.2/MG5_aMC_v3_4_2/HEPTools/hepmc/include/HepMC" || /usr/bin/mkdir -p "/home/nicola/MG5_aMC_v3.4.2/MG5_aMC_v3_4_2/HEPTools/hepmc/include/HepMC"
 /usr/bin/install -c -m 644 CompareGenEvent.h Flow.h GenEvent.h GenParticle.h GenVertex.h GenCrossSection.h GenRanges.h HeavyIon.h HEPEVT_Wrapper.h HerwigWrapper.h IO_AsciiParticles.h IO_BaseClass.h IO_Exception.h IO_GenEvent.h IO_HEPEVT.h IO_HERWIG.h IteratorRange.h PdfInfo.h Polarization.h PythiaWrapper6_4.h PythiaWrapper6_4_WIN32.h PythiaWrapper.h WeightContainer.h SearchVector.h SimpleVector.h SimpleVector.icc StreamHelpers.h StreamInfo.h enable_if.h is_arithmetic.h TempParticleMap.h Units.h Version.h HepMCDefs.h '/home/nicola/MG5_aMC_v3.4.2/MG5_aMC_v3_4_2/HEPTools/hepmc/include/HepMC'
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Making install in src
make[1]: Entering directory '/tmp/tmpkmrzavya/hepmc2.06.09/src'
make[2]: Entering directory '/tmp/tmpkmrzavya/hepmc2.06.09/src'
test -z "/home/nicola/MG5_aMC_v3.4.2/MG5_aMC_v3_4_2/HEPTools/hepmc/lib" || /usr/bin/mkdir -p "/home/nicola/MG5_aMC_v3.4.2/MG5_aMC_v3_4_2/HEPTools/hepmc/lib"
/usr/bin/mkdir: cannot create directory ‘/home/nicola/MG5_aMC_v3.4.2/MG5_aMC_v3_4_2/HEPTools/hepmc/lib’: File exists
make[2]: *** [Makefile:298: install-libLTLIBRARIES] Error 1
make[2]: Leaving directory '/tmp/tmpkmrzavya/hepmc2.06.09/src'
make[1]: *** [Makefile:477: install-am] Error 2
make[1]: Leaving directory '/tmp/tmpkmrzavya/hepmc2.06.09/src'
make: *** [Makefile:294: install-recursive] Error 1
 Finished HEPMC installation
ln: failed to create symbolic link 'lib': File exists

    > Now aborting installation of tool 'pythia8'.
Command "install pythia8" interrupted with error:
InvalidCmd : Installation of pythia8 failed.

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MadGraph5_aMC@NLO Edit question
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Olivier Mattelaer (olivier-mattelaer) said :
#1

Never seen such error before... Maybe a permission error forbidding you to clean previous attempt of installation?

Maybe the best is to remove the problematic path manually to be sure that those does not exists before re-starting, or maybe better to do the installation outside of the install command, such that you have full control on the procedure.

Cheers,

Olivier

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