Issue in compiling on mac 10.8.4

Asked by maria

Hello,

I am trying to run MG5_aMCatNLO on my Mac 10.8.4 but I do not succeed.
I have the latest LHAPDFv5.9.1 library installed, gfortran v4.7.2
Find below the error message and the .log file.
Thank you

Maria

------- error message -----
INFO: Starting run
INFO: Compiling the code
INFO: For gauge cancellation, the width of 't' has been set to zero.
INFO: Using built-in libraries for PDFs
INFO: Compiling source...
INFO: ...done, continuing with P* directories
INFO: Compiling directories...
INFO: Compiling on 4 cores
INFO: Compiling P0_gg_ttx...
INFO: Compiling P0_uux_ttx...
INFO: Compiling P0_uxu_ttx...
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
dyld: lazy symbol binding failed: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/SubProcesses/P0_uxu_ttx/./test_ME
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/SubProcesses/P0_uxu_ttx/./test_ME
  Expected in: /usr/lib/libSystem.B.dylib

dyld: lazy symbol binding failed: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/
Program received signal SIGTRAP: Trace/breakpoint trap.
SubProcesses/P0_gg_ttx/./test_ME
Backtrace for this error:

  Expected in: /usr/lib/libSystdyld: lazy symbol binding failedem.B.dylib

: Symbol not found: ___multf3
  dyld: Symbol not found: ___multfReferenced from: /Users/mariaubi3
  Referenced from: /Users/mariali/hep/MG5_aMC_v2_1_2/TTBARqcd/aubiali/hep/MG5_aMC_v2_1_2/TTBARSubProcesses/P0_uux_ttx/./test_Mqcd/SubProcesses/P0_gg_ttx/./tesE
  Expected in: /usr/lib/libSyst_ME
  Expected in: /usr/lib/libtem.B.dylib

System.B.dylib

dyld: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/SubProcesses/P0_uux_ttx/./test_ME
  Expected in: /usr/lib/libSystem.B.dylib

#0 0x1060bd0ee

Program received signal SIGTRAP: Trace/breakpoint trap.

Program received signal SIGTRAP: Trace/breakpoint trap.

Backtrace for this error:
#1
Backtrace for this error:
0x1060bd804
#2 0x7fff878ac949
#0 #0 0x1060260ee
0x11238d0ee
#1 #1 0x106026804
0x11238d804
#2 #2 0x7fff878ac949
0x7fff878ac949
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
dyld: lazy symbol binding failed: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/SubProcesses/P0_uux_ttx/./check_poles
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/SubProcesses/P0_uux_ttx/./check_poles
  Expected in: /usr/lib/libSystem.B.dylib

Program received signal SIGTRAP: Trace/breakpoint trap.

Backtrace for this error:
#0 0x10bce70ee
#1 0x10bce7804
#2 0x7fff878ac949
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
dyld: lazy symbol binding failed: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/SubProcesses/P0_uxu_ttx/./check_poles
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/SubProcesses/P0_uxu_ttx/./check_poles
  Expected in: /usr/lib/libSystem.B.dylib

Program received signal SIGTRAP: Trace/breakpoint trap.

Backtrace for this error:
#0 0x10b7700ee
#1 0x10b770804
#2 0x7fff878ac949
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
dyld: lazy symbol binding failed: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/SubProcesses/P0_uux_ttx/./gensym
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/SubProcesses/P0_uux_ttx/./gensym
  Expected in: /usr/lib/libSystem.B.dylib

Program received signal SIGTRAP: Trace/breakpoint trap.

Backtrace for this error:
#0 0x10c7f00ee
#1 0x10c7f0804
#2 0x7fff878ac949
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
dyld: lazy symbol binding failed: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/SubProcesses/P0_uxu_ttx/./gensym
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/SubProcesses/P0_uxu_ttx/./gensym
  Expected in: /usr/lib/libSystem.B.dylib

Program received signal SIGTRAP: Trace/breakpoint trap.

Backtrace for this error:
#0 0x107ad20ee
#1 0x107ad2804
#2 0x7fff878ac949
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
dyld: lazy symbol binding failed: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/SubProcesses/P0_gg_ttx/./check_poles
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/SubProcesses/P0_gg_ttx/./check_poles
  Expected in: /usr/lib/libSystem.B.dylib

Program received signal SIGTRAP: Trace/breakpoint trap.

Backtrace for this error:
#0 0x10f10b0ee
#1 0x10f10b804
#2 0x7fff878ac949
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
dyld: lazy symbol binding failed: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/SubProcesses/P0_gg_ttx/./gensym
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___multf3
  Referenced from: /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/SubProcesses/P0_gg_ttx/./gensym
  Expected in: /usr/lib/libSystem.B.dylib

Program received signal SIGTRAP: Trace/breakpoint trap.

Backtrace for this error:
#0 0x1095c60ee
#1 0x1095c6804
#2 0x7fff878ac949
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
INFO: P0_uxu_ttx done.
INFO: P0_uux_ttx done.
INFO: P0_gg_ttx done.
INFO: Checking test output:
INFO: P0_gg_ttx
INFO: Result for test_ME:
INFO: Passed.
INFO: Result for check_poles:
WARNING: 0 points have been tried
INFO: P0_uux_ttx
INFO: Result for test_ME:
INFO: Passed.
INFO: Result for check_poles:
WARNING: 0 points have been tried
INFO: P0_uxu_ttx
INFO: Result for test_ME:
INFO: Passed.
INFO: Result for check_poles:
WARNING: 0 points have been tried
INFO: Starting run
INFO: Using 4 cores
INFO: Cleaning previous results
INFO: Doing fixed order NLO
INFO: Setting up grids
INFO: Idle: 0, Running: 0, Completed: 0 [ current time: 12h57 ]
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored
ls: P*/all_G*: No such file or directory
ls: P*/all_G*: No such file or directory
grep: P*/all_G*/res_0: No such file or directory
Traceback (most recent call last):
  File "./sumres.py", line 130, in <module>
    (totABS, math.sqrt(errABS), math.sqrt(errABS)/totABS *100.,tot, math.sqrt(err), math.sqrt(err)/tot *100.)
ZeroDivisionError: float division by zero
INFO: Return code of the event collection: None
INFO: Output of the event collection:
N of directories: 0
Found 0 correctly terminated jobs

Error detected in "launch "
write debug file /Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/run_01_tag_1_debug.log
If you need help with this issue please contact us on https://answers.launchpad.net/madgraph5
aMCatNLOError : An error occurred during the collection of results.
 Please check the .log files inside the directories which failed.
quit
INFO:
Exception AttributeError: AttributeError("'_DummyThread' object has no attribute '_Thread__block'",) in <module 'threading' from '/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.pyc'> ignored

------- log file ----------------------

#************************************************************
#* MadGraph5_aMC@NLO *
#* *
#* * * *
#* * * * * *
#* * * * * 5 * * * * *
#* * * * * *
#* * * *
#* *
#* *
#* VERSION 5.2.1.2 *
#* *
#* The MadGraph5_aMC@NLO Development Team - Find us at *
#* https://server06.fynu.ucl.ac.be/projects/madgraph *
#* and *
#* http://amcatnlo.cern.ch *
#* *
#************************************************************
#* *
#* Command File for aMCatNLO *
#* *
#* run as ./bin/aMCatNLO.py filename *
#* *
#************************************************************
launch
Traceback (most recent call last):
  File "/Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/bin/internal/extended_cmd.py", line 879, in onecmd
    return self.onecmd_orig(line, **opt)
  File "/Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/bin/internal/extended_cmd.py", line 872, in onecmd_orig
    return func(arg, **opt)
  File "/Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/bin/internal/amcatnlo_run_interface.py", line 1185, in do_launch
    evt_file = self.run(mode, options)
  File "/Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/bin/internal/amcatnlo_run_interface.py", line 1357, in run
    self.cross_sect_dict = self.read_results(output, mode)
  File "/Users/mariaubiali/hep/MG5_aMC_v2_1_2/TTBARqcd/bin/internal/amcatnlo_run_interface.py", line 1599, in read_results
    'Please check the .log files inside the directories which failed.')
aMCatNLOError: An error occurred during the collection of results.
Please check the .log files inside the directories which failed.
Value of current Options:
              text_editor : None
              web_browser : None
        cluster_temp_path : None
                  timeout : 60
            cluster_queue : madgraph
         madanalysis_path : None
                   lhapdf : lhapdf-config
                 mg5_path : /Users/mariaubiali/hep/MG5_aMC_v2_1_2
           cluster_memory : None
    cluster_status_update : (600, 30)
             cluster_time : None
               hepmc_path : None
             pythia8_path : None
                hwpp_path : None
   automatic_html_opening : False
       cluster_retry_wait : 300
             stdout_level : None
          pythia-pgs_path : None
                  td_path : None
             delphes_path : None
              thepeg_path : None
             cluster_type : condor
         cluster_nb_retry : 1
         fortran_compiler : None
                  nb_core : 4
              auto_update : 7
      exrootanalysis_path : None
               eps_viewer : None
             syscalc_path : None
             cpp_compiler : None
                 run_mode : 2

Question information

Language:
English Edit question
Status:
Needs information
For:
MadGraph5_aMC@NLO Edit question
Assignee:
marco zaro Edit question
Last query:
Last reply:
Revision history for this message
marco zaro (marco-zaro) said :
#1

ciao Maria,
ok, this looks like a mess....
0) does it work if you don't use lhapdf?
1) the gfortran that you use is in the path, right (and it can be called simply by typing gfortran)?
2) did you use this version of gfortran to compile lhapdf?

let me know...
Cheers from vietnam!

Marco

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