Gephi

different type of edges

Asked by Sarah Mulutzie

Is there a simple way to create different type of edges with in the same network, so you can view only one type or the other?

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Sébastien Heymann (sebastien.heymann) said : 		#1

Hi,

Please share a sample of the file to help us finding the bug :)

Also on loading, the parents are not visible as only the leafs are displayed. The concept of hierarchy in Gephi is not adapted to visualize trees, but to view "meta-groups".

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Sarah Mulutzie (sarahmulutzie) said : 		#2

Thanks, we were hoping to have the parent child tree displayed in the gui and then we can create edges to represent communication links. Here is the file

<?xml version="1.0" encoding="UTF8"?>
<gexf xmlns="http://www.gexf.net/1.2draft"
xmlns:xsi="http://www.w3.org/2001/XMLSchemainstance"
xsi:schemaLocation="http://www.gexf.net/1.2draft
http://www.gexf.net/1.2draft/gexf.xsd"
version="1.2">
<meta lastmodifieddate="2010-12-07">
<creator>Gephi.org</creator>
<description>Comms 2.0 debugging graph</description>
<keywords>debugging, hacks, poorlywrittenjava</keywords>
</meta>
<graph mode="dynamic" timeformat="integer" start="0" end="1000">
<attributes class="node">
 <attribute id="0" title="type" type="string" >
  <default>AGENT</default>
  <options>AGENT|NETWORK|MESSAGE</options>
 </attribute>
</attributes>
<attributes class="edge" mode="dynamic">
 <attribute id="0" title="importance" type="double"/>
</attributes>
 <nodes>
  <node id="0" label="root" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="NETWORK" />
   </attvalues>
  </node>
  <node id="1" label="level-1-a" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="NETWORK" />
   </attvalues>
  </node>
  <node id="2" label="level-1-b" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="NETWORK" />
   </attvalues>
  </node>
  <node id="3" label="level-2-aa" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="NETWORK" />
   </attvalues>
  </node>
  <node id="4" label="level-2-ab" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="NETWORK" />
   </attvalues>
  </node>
  <node id="5" label="level-2-ac" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="NETWORK" />
   </attvalues>
  </node>
  <node id="6" label="level-2-ba" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="NETWORK" />
   </attvalues>
  </node>
  <node id="7" label="level-2-bb" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="NETWORK" />
   </attvalues>
  </node>
  <node id="8" label="level-2-bc" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="NETWORK" />
   </attvalues>
  </node>
  <node id="9" label="9" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
   </attvalues>
   <parents>
    <parent for="0" />
   </parents>
  </node>
  <node id="10" label="10" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
   </attvalues>
   <parents>
    <parent for="0" />
   </parents>
  </node>
  <node id="11" label="11" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
   </attvalues>
   <parents>
    <parent for="0" />
   </parents>
  </node>
  <node id="12" label="12" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
   </attvalues>
   <parents>
    <parent for="0" />
   </parents>
  </node>
  <node id="13" label="13" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
   </attvalues>
   <parents>
    <parent for="0" />
   </parents>
  </node>
  <node id="14" label="14" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
   </attvalues>
   <parents>
    <parent for="0" />
   </parents>
  </node>
  <node id="15" label="15" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
   </attvalues>
   <parents>
    <parent for="0" />
   </parents>
  </node>
  <node id="17" label="17" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
   </attvalues>
   <parents>
    <parent for="0" />
   </parents>
  </node>
  <node id="16" label="16" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
   </attvalues>
   <parents>
    <parent for="0" />
   </parents>
  </node>
  <node id="19" label="19" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
   </attvalues>
   <parents>
    <parent for="1" />
   </parents>
  </node>
  <node id="18" label="18" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
   </attvalues>
   <parents>
    <parent for="0" />
   </parents>
  </node>
  <node id="21" label="21" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
   </attvalues>
   <parents>
    <parent for="1" />
   </parents>
  </node>
  <node id="20" label="20" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
   </attvalues>
   <parents>
    <parent for="1" />
   </parents>
  </node>
  <node id="23" label="23" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
   </attvalues>
   <parents>
    <parent for="1" />
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  </node>
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   <attvalues>
    <attvalue for="0" value="AGENT" />
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   <parents>
    <parent for="1" />
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   <attvalues>
    <attvalue for="0" value="AGENT" />
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   <attvalues>
    <attvalue for="0" value="AGENT" />
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   <parents>
    <parent for="1" />
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  </node>
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   <attvalues>
    <attvalue for="0" value="AGENT" />
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   <parents>
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   <attvalues>
    <attvalue for="0" value="AGENT" />
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    <attvalue for="0" value="AGENT" />
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   <parents>
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   <attvalues>
    <attvalue for="0" value="AGENT" />
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   <parents>
    <parent for="2" />
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  </node>
  <node id="30" label="30" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
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   <parents>
    <parent for="2" />
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  </node>
  <node id="34" label="34" start="0" end="1000" >
   <attvalues>
    <attvalue for="0" value="AGENT" />
   </attvalues>
   <parents>
    <parent for="2" />
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  </node>
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   <attvalues>
    <attvalue for="0" value="AGENT" />
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   <parents>
    <parent for="2" />
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  </node>
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   <attvalues>
    <attvalue for="0" value="AGENT" />
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   <parents>
    <parent for="2" />
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  </node>
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   <attvalues>
    <attvalue for="0" value="AGENT" />
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    <attvalue for="0" value="AGENT" />
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    <attvalue for="0" value="AGENT" />
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   <parents>
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    <parent for="7" />
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 </nodes>
 <edges>
 </edges>
</graph>
</gexf>

Revision history for this message
Sébastien Heymann (sebastien.heymann) said : 		#3

There is a bug in Gephi: the hierarchy is not created.

Anyway, use normal edges with an attribute named "parent of" for instance, and you'll see the tree.

cheers!

Revision history for this message
Sarah Mulutzie (sarahmulutzie) said : 		#4

ok... thanks

Revision history for this message
Sébastien Heymann (sebastien.heymann) said : 		#5

Just add an edge attribute called...whatever, "type" for instance.

Then in Gephi filters, use Attributes > Equal in the library to filter the edges.

Can you help with this problem?

Provide an answer of your own, or ask Sarah Mulutzie for more information if necessary.

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