ESyS-Particle

install problem

Asked by huanghe

Hi,there

I am a freshman in ubuntu and ESyS, I need for your kind help.

I followed the Mr. Dion Weatherley 's "How do I install ESyS-Particle on ubuntu?" (https://answers.launchpad.net/esys-particle/+faq/261) to install ESyS, when I went to step 7 and type "sudo make -j 2", something went wrong, the terminal says,
"........collect2: ld returned 1 exit status
make[2]: *** [ESySParticleBEWorker] error 1
make[2]:leaving `/home/kou/ESyS-Particle-2.0/MainBE'
make[1]: *** [all-recursive] error 1
make[1]:leaving `/home/kou/ESyS-Particle-2.0'
make: *** [all] error 2"

One time, when I input "sudo ./configure CC=mpicc CXX=mpic++", there existed lines like this in terminal, but when I tried like "https://answers.launchpad.net/esys-particle/+question/81455" , typed "
1) make uninstall
2) make distclean
3) sh autogen.sh
4) ./configure CC=mpicc CXX=mpic++ --without-epydoc --without-povray --without-vtk"

the problem disappeared, however, when I typed "sudo make", the same lines come up, I don;'t know why.

Please help me with this.Thanks in advance.

PS: The information of my Ubuntu is as follow.
No LSB modules are available.
Distributor ID: Ubuntu
Description: Ubuntu 10.04.2 LTS
Release: 10.04
Codename: lucid

Regards,
Mingyin Kou

Question information

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Status:
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For:
ESyS-Particle Edit question
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Solved by:
Dion Weatherley
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Revision history for this message
Dion Weatherley (d-weatherley) said : 		#1

Hi Mingyin,

There were a few changes to Ubuntu in v10.04 that affected ESyS-Particle installation. Consequently I wrote updated instructions on how to install ESyS-Particle for Ubuntu-10.04. Those instructions are here:
https://answers.launchpad.net/esys-particle/+faq/1282

I suggest you start from scratch by first typing:
sudo make uninstall
sudo make distclean

After that I would probably download a fresh copy of ESyS-Particle from our SVN repository as well, before starting configuration and installation. Be careful to only use "sudo" to install packages or for the final "sudo make install" step. ./configure and make should not be called using sudo.

Good luck.

Dion.

Revision history for this message
huanghe (kmy2009) said : 		#2

Hi Dion,

Thank you for your kind answer. I have tried the instructions you recommend in :https://answers.launchpad.net/esys-particle/+faq/1282, but when I come to the line "make", the same thing happened, the terminal says,"
......collect2: ld returned 1 exit status
make[2]: *** [ESySParticleBEWorker] error 1
make[2]:leaving `/home/kou/esys-particle/MainBE'
make[1]: *** [all-recursive] error 1
make[1]:leaving `/home/kou/esys-particle'
make: *** [all] error 2"

So what should I do further to solve this problem?

Thank you very much!

Regards,

Mingyin Kou

Revision history for this message
Dion Weatherley (d-weatherley) said : 		#3

Hi Mingyin,

Could you please send some more of the lines of output from "make" prior to the lines you sent already? The lines you have posted do not contain exact information on the error encountered.

Cheers,

Dion.

Revision history for this message
huanghe (kmy2009) said : 		#4

OK，thank you very in advance!

The lines are:
......
s/VWFrictionInteraction.Tpo -c VWFrictionInteraction.cpp -fPIC -DPIC -o .libs/VWFrictionInteraction.o
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT VWFrictionInteraction.lo -MD -MP -MF .deps/VWFrictionInteraction.Tpo -c VWFrictionInteraction.cpp -o VWFrictionInteraction.o >/dev/null 2>&1
mv -f .deps/VWFrictionInteraction.Tpo .deps/VWFrictionInteraction.Plo
/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT Wall.lo -MD -MP -MF .deps/Wall.Tpo -c -o Wall.lo Wall.cpp
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT Wall.lo -MD -MP -MF .deps/Wall.Tpo -c Wall.cpp -fPIC -DPIC -o .libs/Wall.o
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT Wall.lo -MD -MP -MF .deps/Wall.Tpo -c Wall.cpp -o Wall.o >/dev/null 2>&1
mv -f .deps/Wall.Tpo .deps/Wall.Plo
/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT BondedInteractionCpData.lo -MD -MP -MF .deps/BondedInteractionCpData.Tpo -c -o BondedInteractionCpData.lo BondedInteractionCpData.cpp
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT BondedInteractionCpData.lo -MD -MP -MF .deps/BondedInteractionCpData.Tpo -c BondedInteractionCpData.cpp -fPIC -DPIC -o .libs/BondedInteractionCpData.o
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT BondedInteractionCpData.lo -MD -MP -MF .deps/BondedInteractionCpData.Tpo -c BondedInteractionCpData.cpp -o BondedInteractionCpData.o >/dev/null 2>&1
mv -f .deps/BondedInteractionCpData.Tpo .deps/BondedInteractionCpData.Plo
/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT BMesh2DInteractionCpData.lo -MD -MP -MF .deps/BMesh2DInteractionCpData.Tpo -c -o BMesh2DInteractionCpData.lo BMesh2DInteractionCpData.cpp
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT BMesh2DInteractionCpData.lo -MD -MP -MF .deps/BMesh2DInteractionCpData.Tpo -c BMesh2DInteractionCpData.cpp -fPIC -DPIC -o .libs/BMesh2DInteractionCpData.o
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT BMesh2DInteractionCpData.lo -MD -MP -MF .deps/BMesh2DInteractionCpData.Tpo -c BMesh2DInteractionCpData.cpp -o BMesh2DInteractionCpData.o >/dev/null 2>&1
mv -f .deps/BMesh2DInteractionCpData.Tpo .deps/BMesh2DInteractionCpData.Plo
/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT BTriMeshIP.lo -MD -MP -MF .deps/BTriMeshIP.Tpo -c -o BTriMeshIP.lo BTriMeshIP.cpp
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT BTriMeshIP.lo -MD -MP -MF .deps/BTriMeshIP.Tpo -c BTriMeshIP.cpp -fPIC -DPIC -o .libs/BTriMeshIP.o
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT BTriMeshIP.lo -MD -MP -MF .deps/BTriMeshIP.Tpo -c BTriMeshIP.cpp -o BTriMeshIP.o >/dev/null 2>&1
mv -f .deps/BTriMeshIP.Tpo .deps/BTriMeshIP.Plo
/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotParticleVi.lo -MD -MP -MF .deps/RotParticleVi.Tpo -c -o RotParticleVi.lo RotParticleVi.cpp
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotParticleVi.lo -MD -MP -MF .deps/RotParticleVi.Tpo -c RotParticleVi.cpp -fPIC -DPIC -o .libs/RotParticleVi.o
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotParticleVi.lo -MD -MP -MF .deps/RotParticleVi.Tpo -c RotParticleVi.cpp -o RotParticleVi.o >/dev/null 2>&1
mv -f .deps/RotParticleVi.Tpo .deps/RotParticleVi.Plo
/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermBondedInteraction.lo -MD -MP -MF .deps/RotThermBondedInteraction.Tpo -c -o RotThermBondedInteraction.lo RotThermBondedInteraction.cpp
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermBondedInteraction.lo -MD -MP -MF .deps/RotThermBondedInteraction.Tpo -c RotThermBondedInteraction.cpp -fPIC -DPIC -o .libs/RotThermBondedInteraction.o
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermBondedInteraction.lo -MD -MP -MF .deps/RotThermBondedInteraction.Tpo -c RotThermBondedInteraction.cpp -o RotThermBondedInteraction.o >/dev/null 2>&1
mv -f .deps/RotThermBondedInteraction.Tpo .deps/RotThermBondedInteraction.Plo
/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermElasticInteraction.lo -MD -MP -MF .deps/RotThermElasticInteraction.Tpo -c -o RotThermElasticInteraction.lo RotThermElasticInteraction.cpp
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermElasticInteraction.lo -MD -MP -MF .deps/RotThermElasticInteraction.Tpo -c RotThermElasticInteraction.cpp -fPIC -DPIC -o .libs/RotThermElasticInteraction.o
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermElasticInteraction.lo -MD -MP -MF .deps/RotThermElasticInteraction.Tpo -c RotThermElasticInteraction.cpp -o RotThermElasticInteraction.o >/dev/null 2>&1
mv -f .deps/RotThermElasticInteraction.Tpo .deps/RotThermElasticInteraction.Plo
/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermElasticInteractionGroup.lo -MD -MP -MF .deps/RotThermElasticInteractionGroup.Tpo -c -o RotThermElasticInteractionGroup.lo RotThermElasticInteractionGroup.cpp
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermElasticInteractionGroup.lo -MD -MP -MF .deps/RotThermElasticInteractionGroup.Tpo -c RotThermElasticInteractionGroup.cpp -fPIC -DPIC -o .libs/RotThermElasticInteractionGroup.o
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermElasticInteractionGroup.lo -MD -MP -MF .deps/RotThermElasticInteractionGroup.Tpo -c RotThermElasticInteractionGroup.cpp -o RotThermElasticInteractionGroup.o >/dev/null 2>&1
mv -f .deps/RotThermElasticInteractionGroup.Tpo .deps/RotThermElasticInteractionGroup.Plo
/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermFricInteraction.lo -MD -MP -MF .deps/RotThermFricInteraction.Tpo -c -o RotThermFricInteraction.lo RotThermFricInteraction.cpp
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermFricInteraction.lo -MD -MP -MF .deps/RotThermFricInteraction.Tpo -c RotThermFricInteraction.cpp -fPIC -DPIC -o .libs/RotThermFricInteraction.o
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermFricInteraction.lo -MD -MP -MF .deps/RotThermFricInteraction.Tpo -c RotThermFricInteraction.cpp -o RotThermFricInteraction.o >/dev/null 2>&1
mv -f .deps/RotThermFricInteraction.Tpo .deps/RotThermFricInteraction.Plo
/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermPairInteraction.lo -MD -MP -MF .deps/RotThermPairInteraction.Tpo -c -o RotThermPairInteraction.lo RotThermPairInteraction.cpp
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermPairInteraction.lo -MD -MP -MF .deps/RotThermPairInteraction.Tpo -c RotThermPairInteraction.cpp -fPIC -DPIC -o .libs/RotThermPairInteraction.o
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermPairInteraction.lo -MD -MP -MF .deps/RotThermPairInteraction.Tpo -c RotThermPairInteraction.cpp -o RotThermPairInteraction.o >/dev/null 2>&1
mv -f .deps/RotThermPairInteraction.Tpo .deps/RotThermPairInteraction.Plo
/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermParticle.lo -MD -MP -MF .deps/RotThermParticle.Tpo -c -o RotThermParticle.lo RotThermParticle.cpp
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermParticle.lo -MD -MP -MF .deps/RotThermParticle.Tpo -c RotThermParticle.cpp -fPIC -DPIC -o .libs/RotThermParticle.o
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT RotThermParticle.lo -MD -MP -MF .deps/RotThermParticle.Tpo -c RotThermParticle.cpp -o RotThermParticle.o >/dev/null 2>&1
mv -f .deps/RotThermParticle.Tpo .deps/RotThermParticle.Plo
/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT ThermParticle.lo -MD -MP -MF .deps/ThermParticle.Tpo -c -o ThermParticle.lo ThermParticle.cpp
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT ThermParticle.lo -MD -MP -MF .deps/ThermParticle.Tpo -c ThermParticle.cpp -fPIC -DPIC -o .libs/ThermParticle.o
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -g -O2 -MT ThermParticle.lo -MD -MP -MF .deps/ThermParticle.Tpo -c ThermParticle.cpp -o ThermParticle.o >/dev/null 2>&1
mv -f .deps/ThermParticle.Tpo .deps/ThermParticle.Plo
/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -release 2.0 -L/usr/lib -o libModel.la -rpath /usr/local/lib ABCDampingIGP.lo AdhesiveFriction.lo BasicParticle.lo BodyForceGroup.lo BondedInteraction.lo BTriangleInteraction.lo BEdge2DInteraction.lo BCorner2DInteraction.lo BWallInteraction.lo BWallInteractionGroup.lo CappedBondedInteraction.lo DampingIGP.lo ECornerInteraction.lo ECorner2DInteraction.lo EEdgeInteraction.lo EEdge2DInteraction.lo ElasticInteraction.lo ElasticInteractionGroup.lo ETriangleInteraction.lo EWallInteractionGroup.lo FractalFriction.lo FrictionInteraction.lo HertzianElasticInteraction.lo HertzianViscoElasticFrictionInteraction.lo HertzianViscoElasticInteraction.lo IGParam.lo Interaction.lo InteractionParam.lo LinearDashpotInteraction.lo LocalDampingIGP.lo MeshData.lo MeshData2D.lo Mesh2D.lo Particle.lo RotBondedInteraction.lo RotElasticInteraction.lo RotElasticInteractionGroup.lo RotFricInteraction.lo RotPairInteraction.lo RotParticle.lo ShortBondedInteraction.lo ShortBondedInteractionCpData.lo SoftBWallInteractionGroup.lo TriMesh.lo ViscWallIG.lo VWFrictionInteraction.lo Wall.lo BondedInteractionCpData.lo BMesh2DInteractionCpData.lo BTriMeshIP.lo RotParticleVi.lo RotThermBondedInteraction.lo RotThermElasticInteraction.lo RotThermElasticInteractionGroup.lo RotThermFricInteraction.lo RotThermPairInteraction.lo RotThermParticle.lo ThermParticle.lo ../Foundation/libFoundation.la ../Geometry/libGgGeometry.la -lpython2.6
libtool: link: mpic++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.4.3/crtbeginS.o .libs/ABCDampingIGP.o .libs/AdhesiveFriction.o .libs/BasicParticle.o .libs/BodyForceGroup.o .libs/BondedInteraction.o .libs/BTriangleInteraction.o .libs/BEdge2DInteraction.o .libs/BCorner2DInteraction.o .libs/BWallInteraction.o .libs/BWallInteractionGroup.o .libs/CappedBondedInteraction.o .libs/DampingIGP.o .libs/ECornerInteraction.o .libs/ECorner2DInteraction.o .libs/EEdgeInteraction.o .libs/EEdge2DInteraction.o .libs/ElasticInteraction.o .libs/ElasticInteractionGroup.o .libs/ETriangleInteraction.o .libs/EWallInteractionGroup.o .libs/FractalFriction.o .libs/FrictionInteraction.o .libs/HertzianElasticInteraction.o .libs/HertzianViscoElasticFrictionInteraction.o .libs/HertzianViscoElasticInteraction.o .libs/IGParam.o .libs/Interaction.o .libs/InteractionParam.o .libs/LinearDashpotInteraction.o .libs/LocalDampingIGP.o .libs/MeshData.o .libs/MeshData2D.o .libs/Mesh2D.o .libs/Particle.o .libs/RotBondedInteraction.o .libs/RotElasticInteraction.o .libs/RotElasticInteractionGroup.o .libs/RotFricInteraction.o .libs/RotPairInteraction.o .libs/RotParticle.o .libs/ShortBondedInteraction.o .libs/ShortBondedInteractionCpData.o .libs/SoftBWallInteractionGroup.o .libs/TriMesh.o .libs/ViscWallIG.o .libs/VWFrictionInteraction.o .libs/Wall.o .libs/BondedInteractionCpData.o .libs/BMesh2DInteractionCpData.o .libs/BTriMeshIP.o .libs/RotParticleVi.o .libs/RotThermBondedInteraction.o .libs/RotThermElasticInteraction.o .libs/RotThermElasticInteractionGroup.o .libs/RotThermFricInteraction.o .libs/RotThermPairInteraction.o .libs/RotThermParticle.o .libs/ThermParticle.o -Wl,-rpath -Wl,/home/kou/esys-particle/Foundation/.libs -Wl,-rpath -Wl,/home/kou/esys-particle/Geometry/.libs -L/usr/lib ../Foundation/.libs/libFoundation.so ../Geometry/.libs/libGgGeometry.so -lpython2.6 -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpi_cxx -lmpi -lopen-rte -lopen-pal -lnsl -lutil -ldl -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.4.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib/crtn.o -Wl,-soname -Wl,libModel-2.0.so -o .libs/libModel-2.0.so
libtool: link: (cd ".libs" && rm -f "libModel.so" && ln -s "libModel-2.0.so" "libModel.so")
libtool: link: ar cru .libs/libModel.a ABCDampingIGP.o AdhesiveFriction.o BasicParticle.o BodyForceGroup.o BondedInteraction.o BTriangleInteraction.o BEdge2DInteraction.o BCorner2DInteraction.o BWallInteraction.o BWallInteractionGroup.o CappedBondedInteraction.o DampingIGP.o ECornerInteraction.o ECorner2DInteraction.o EEdgeInteraction.o EEdge2DInteraction.o ElasticInteraction.o ElasticInteractionGroup.o ETriangleInteraction.o EWallInteractionGroup.o FractalFriction.o FrictionInteraction.o HertzianElasticInteraction.o HertzianViscoElasticFrictionInteraction.o HertzianViscoElasticInteraction.o IGParam.o Interaction.o InteractionParam.o LinearDashpotInteraction.o LocalDampingIGP.o MeshData.o MeshData2D.o Mesh2D.o Particle.o RotBondedInteraction.o RotElasticInteraction.o RotElasticInteractionGroup.o RotFricInteraction.o RotPairInteraction.o RotParticle.o ShortBondedInteraction.o ShortBondedInteractionCpData.o SoftBWallInteractionGroup.o TriMesh.o ViscWallIG.o VWFrictionInteraction.o Wall.o BondedInteractionCpData.o BMesh2DInteractionCpData.o BTriMeshIP.o RotParticleVi.o RotThermBondedInteraction.o RotThermElasticInteraction.o RotThermElasticInteractionGroup.o RotThermFricInteraction.o RotThermPairInteraction.o RotThermParticle.o ThermParticle.o
libtool: link: ranlib .libs/libModel.a
libtool: link: ( cd ".libs" && rm -f "libModel.la" && ln -s "../libModel.la" "libModel.la" )
make[2]:正在离开目录 `/home/kou/esys-particle/Model'
Making all in Fields
make[2]: 正在进入目录 `/home/kou/esys-particle/Fields'
/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Model -g -O2 -MT FieldMaster.lo -MD -MP -MF .deps/FieldMaster.Tpo -c -o FieldMaster.lo FieldMaster.cpp
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Model -g -O2 -MT FieldMaster.lo -MD -MP -MF .deps/FieldMaster.Tpo -c FieldMaster.cpp -fPIC -DPIC -o .libs/FieldMaster.o
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Model -g -O2 -MT FieldMaster.lo -MD -MP -MF .deps/FieldMaster.Tpo -c FieldMaster.cpp -o FieldMaster.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -release 2.0 -L/usr/lib -o libFields.la -rpath /usr/local/lib FieldMaster.lo FieldSlave.lo InteractionFieldMaster.lo ParticleFieldMaster.lo TriggeredVectorParticleFieldMaster.lo ScalarParticleDistributionMaster.lo ScalarTriangleFieldMaster.lo ScalarTriangleFieldSlave.lo VectorInteractionFieldMaster.lo VectorTriangleFieldMaster.lo VectorTriangleFieldSlave.lo VectorEdge2DFieldSlave.lo WallFieldSlave.lo WallFieldMaster.lo MaxTrigger.lo ../Foundation/libFoundation.la ../Model/libModel.la -lpython2.6
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libtool: link: (cd ".libs" && rm -f "libFields.so" && ln -s "libFields-2.0.so" "libFields.so")
libtool: link: ar cru .libs/libFields.a FieldMaster.o FieldSlave.o InteractionFieldMaster.o ParticleFieldMaster.o TriggeredVectorParticleFieldMaster.o ScalarParticleDistributionMaster.o ScalarTriangleFieldMaster.o ScalarTriangleFieldSlave.o VectorInteractionFieldMaster.o VectorTriangleFieldMaster.o VectorTriangleFieldSlave.o VectorEdge2DFieldSlave.o WallFieldSlave.o WallFieldMaster.o MaxTrigger.o
libtool: link: ranlib .libs/libFields.a
libtool: link: ( cd ".libs" && rm -f "libFields.la" && ln -s "../libFields.la" "libFields.la" )
make[2]:正在离开目录 `/home/kou/esys-particle/Fields'
Making all in Parallel
make[2]: 正在进入目录 `/home/kou/esys-particle/Parallel'
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libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I.. -I../Foundation -I../Model -I../Fields -I../Interface -I../MainBE -I../Socket -g -O2 -MT MeshReader.lo -MD -MP -MF .deps/MeshReader.Tpo -c MeshReader.cpp -fPIC -DPIC -o .libs/MeshReader.o
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/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I.. -I../Foundation -I../Model -I../Fields -I../Interface -I../MainBE -I../Socket -g -O2 -MT GetRef_cmd.lo -MD -MP -MF .deps/GetRef_cmd.Tpo -c -o GetRef_cmd.lo GetRef_cmd.cpp
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I.. -I../Foundation -I../Model -I../Fields -I../Interface -I../MainBE -I../Socket -g -O2 -MT GetRef_cmd.lo -MD -MP -MF .deps/GetRef_cmd.Tpo -c GetRef_cmd.cpp -fPIC -DPIC -o .libs/GetRef_cmd.o
libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I.. -I../Foundation -I../Model -I../Fields -I../Interface -I../MainBE -I../Socket -g -O2 -MT GetRef_cmd.lo -MD -MP -MF .deps/GetRef_cmd.Tpo -c GetRef_cmd.cpp -o GetRef_cmd.o >/dev/null 2>&1
mv -f .deps/GetRef_cmd.Tpo .deps/GetRef_cmd.Plo
/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -L/usr/lib -o libParallel.la -rpath /usr/local/lib ASubLattice.lo LatticeMaster.lo mpia2abuf.lo mpibarrier.lo mpibuf.lo mpicmdbuf.lo mpisgbuf.lo mpisgvbuf.lo mpivbuf.lo SubLatticeControler.lo SubLattice.lo vec3_mpi.lo vecpack.lo CheckPointer.lo CheckPointController.lo CheckPointParams.lo MpiInfo.lo GeometryReader.lo CheckPointable.lo CheckPointInfo.lo CheckPointLoader.lo LatticeParam.lo MeshReader.lo MeshReaderImpl.lo Mesh2DReader.lo Mesh2DReaderImpl.lo BroadCast_cmd.lo BMesh2D_cmd.lo GetRef_cmd.lo ../Foundation/libFoundation.la ../Geometry/libGgGeometry.la ../tml/comm/libTmlComm.la ../ppa/src/libppa.la ../Model/libModel.la ../Fields/libFields.la -lpython2.6
libtool: link: mpic++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.4.3/crtbeginS.o .libs/ASubLattice.o .libs/LatticeMaster.o .libs/mpia2abuf.o .libs/mpibarrier.o .libs/mpibuf.o .libs/mpicmdbuf.o .libs/mpisgbuf.o .libs/mpisgvbuf.o .libs/mpivbuf.o .libs/SubLatticeControler.o .libs/SubLattice.o .libs/vec3_mpi.o .libs/vecpack.o .libs/CheckPointer.o .libs/CheckPointController.o .libs/CheckPointParams.o .libs/MpiInfo.o .libs/GeometryReader.o .libs/CheckPointable.o .libs/CheckPointInfo.o .libs/CheckPointLoader.o .libs/LatticeParam.o .libs/MeshReader.o .libs/MeshReaderImpl.o .libs/Mesh2DReader.o .libs/Mesh2DReaderImpl.o .libs/BroadCast_cmd.o .libs/BMesh2D_cmd.o .libs/GetRef_cmd.o -Wl,-rpath -Wl,/home/kou/esys-particle/Foundation/.libs -Wl,-rpath -Wl,/home/kou/esys-particle/Geometry/.libs -Wl,-rpath -Wl,/home/kou/esys-particle/tml/comm/.libs -Wl,-rpath -Wl,/home/kou/esys-particle/ppa/src/.libs -Wl,-rpath -Wl,/home/kou/esys-particle/Model/.libs -Wl,-rpath -Wl,/home/kou/esys-particle/Fields/.libs -L/usr/lib ../Foundation/.libs/libFoundation.so ../Geometry/.libs/libGgGeometry.so ../tml/comm/.libs/libTmlComm.so ../ppa/src/.libs/libppa.so ../Model/.libs/libModel.so ../Fields/.libs/libFields.so -lpython2.6 -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpi_cxx -lmpi -lopen-rte -lopen-pal -lnsl -lutil -ldl -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.4.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib/crtn.o -Wl,-soname -Wl,libParallel.so.0 -o .libs/libParallel.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libParallel.so.0" && ln -s "libParallel.so.0.0.0" "libParallel.so.0")
libtool: link: (cd ".libs" && rm -f "libParallel.so" && ln -s "libParallel.so.0.0.0" "libParallel.so")
libtool: link: ar cru .libs/libParallel.a ASubLattice.o LatticeMaster.o mpia2abuf.o mpibarrier.o mpibuf.o mpicmdbuf.o mpisgbuf.o mpisgvbuf.o mpivbuf.o SubLatticeControler.o SubLattice.o vec3_mpi.o vecpack.o CheckPointer.o CheckPointController.o CheckPointParams.o MpiInfo.o GeometryReader.o CheckPointable.o CheckPointInfo.o CheckPointLoader.o LatticeParam.o MeshReader.o MeshReaderImpl.o Mesh2DReader.o Mesh2DReaderImpl.o BroadCast_cmd.o BMesh2D_cmd.o GetRef_cmd.o
libtool: link: ranlib .libs/libParallel.a
libtool: link: ( cd ".libs" && rm -f "libParallel.la" && ln -s "../libParallel.la" "libParallel.la" )
make[2]:正在离开目录 `/home/kou/esys-particle/Parallel'
Making all in MainBE
make[2]: 正在进入目录 `/home/kou/esys-particle/MainBE'
mpic++ -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Model -I../Parallel -I../Fields -g -O2 -MT Worker.o -MD -MP -MF .deps/Worker.Tpo -c -o Worker.o Worker.cpp
mv -f .deps/Worker.Tpo .deps/Worker.Po
/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -release 2.0 -L/usr/lib -o ESySParticleBEWorker Worker.o ../Parallel/libParallel.la ../ntable/src/libntable.la ../tml/message/libTmlMessage.la ../tml/type/libTmlType.la ../ppa/src/libppa.la ../Fields/libFields.la ../Geometry/libGgGeometry.la -lboost_filesystem-mt -lpython2.6
libtool: link: warning: `-release' is ignored for programs
libtool: link: mpic++ -g -O2 -o .libs/ESySParticleBEWorker Worker.o -L/usr/lib ../Parallel/.libs/libParallel.so ../ntable/src/.libs/libntable.so ../tml/message/.libs/libTmlMessage.so ../tml/type/.libs/libTmlType.so ../ppa/src/.libs/libppa.so ../Fields/.libs/libFields.so ../Geometry/.libs/libGgGeometry.so -lboost_filesystem-mt -lpython2.6
/usr/bin/ld: Worker.o: in function main:../Foundation/console.h:60: error: undefined reference to 'BasicCon::quiet'
/usr/bin/ld: Worker.o: in function main:Worker.cpp:39: error: undefined reference to 'BasicCon::SetVerbose(int)'
/usr/bin/ld: Worker.o: in function main:../Foundation/console.h:61: error: undefined reference to 'BasicCon::timing'
/usr/bin/ld: Worker.o: in function main:Worker.cpp:56: error: undefined reference to 'console'
/usr/bin/ld: Worker.o: in function main:Worker.cpp:56: error: undefined reference to 'BasicCon::Debug(bool)'
/usr/bin/ld: Worker.o: in function main:Worker.cpp:56: error: undefined reference to 'BasicCon::operator<<(char const*)'
/usr/bin/ld: Worker.o: in function main:../Foundation/console.h:60: error: undefined reference to 'BasicCon::quiet'
/usr/bin/ld: Worker.o: in function main:Worker.cpp:52: error: undefined reference to 'BasicCon::SetVerbose(int)'
/usr/bin/ld: Worker.o: in function main:Worker.cpp:77: error: undefined reference to 'console'
/usr/bin/ld: Worker.o: in function main:Worker.cpp:77: error: undefined reference to 'BasicCon::Error(bool)'
/usr/bin/ld: Worker.o: in function main:Worker.cpp:77: error: undefined reference to 'BasicCon::operator<<(char const*)'
/usr/bin/ld: Worker.o: in function main:Worker.cpp:77: error: undefined reference to 'BasicCon::operator<<(char const*)'
/usr/bin/ld: Worker.o: in function main:Worker.cpp:71: error: undefined reference to 'console'
/usr/bin/ld: Worker.o: in function main:Worker.cpp:71: error: undefined reference to 'BasicCon::Error(bool)'
/usr/bin/ld: Worker.o: in function main:Worker.cpp:71: error: undefined reference to 'BasicCon::operator<<(char const*)'
/usr/bin/ld: Worker.o: in function main:Worker.cpp:65: error: undefined reference to 'console'
/usr/bin/ld: Worker.o: in function main:Worker.cpp:65: error: undefined reference to 'BasicCon::Error(bool)'
collect2: ld returned 1 exit status
make[2]: *** [ESySParticleBEWorker] error 1
make[2]:leaving `/home/kou/esys-particle/MainBE'
make[1]: *** [all-recursive] error 1
make[1]:leaving `/home/kou/esys-particle'
make: *** [all] error 2"

I can only see these lines in terminal, because the lines are so long that the lines at the former part don't show up, I don't know if that is enough.

BTW, my ubuntu is a Chinese system, does it has something related to this problem.

Thank you very much!

Regards,

Mingyin

Revision history for this message
Best Dion Weatherley (d-weatherley) said : 		#5

Hi Mingyin,

Thanks for the extra output messages. I'm still not entirely sure what the problem is but perhaps we can work around it. Worker.cpp is no longer required to run ESyS-Particle so let's try to avoid compiling it.

Open "Makefile.am" in the parent ESyS-Particle source directory with a text editor and remove the word "MainBE" from the line starting with "SUBDIRS". After that re-run your ./configure command and try "make" again when that is finished. Hopefully you will get further with compiling this time but I suspect a similar error will occur later. If that happens, please post the error messages for that case. You only need to send the output from the start of messages like the following:

/usr/bin/ld: Worker.o: in function main:../Foundation/console.h:60: error: undefined reference to 'BasicCon::quiet'
/usr/bin/ld: Worker.o: in function main:Worker.cpp:39: error: undefined reference to 'BasicCon::SetVerbose(int)'

I haven't got any experience with the Chinese version of Ubuntu but I doubt this would be a problem for ESyS-Particle.

Cheers,

Dion.

Revision history for this message
huanghe (kmy2009) said : 		#6

Hi,Dion

The same thing happened when I tried again, what a pity, maybe it's the Chinese system problem.

I will try later after I change my system to English.

Thank you very much for your kind help!

Regards,

Mingyin Kou

Revision history for this message
huanghe (kmy2009) said : 		#7

Thanks Dion Weatherley, that solved my question.

Revision history for this message
Tao (aaronztao) said : 		#8

See https://answers.launchpad.net/esys-particle/+question/97265
"I had binutils-gold installed, which is faster than "simple ld". But it does not compile ESyS." So, please uninstall binutils-gold