Duplicity

Patching error

Asked by luciano tolomei

I'm trying to restore mysql files and i got:
 Error '3' patching

on ibdata1 file

What to do ?

i manage to restore to the last full backup but it's of 2015/03/20 and the binary log from then is 15GB and it fails (why ?) to restore.

Question information

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Revision history for this message
luciano tolomei (luciano-3) said : 		#1

initially files where on glacier but failed to download so i downloaded them manually and i'm trying from local.

my command is:
duplicity --no-encryption --restore-time "2015-08-25" -v8 --file-to-restore var/lib/mysql file:///home/backup/mount/v870 /home/backup/mount/mysqlrescue

output:

[...]
duplicity 0.6.24 (May 09, 2014)
Args: /usr/bin/duplicity --no-encryption --restore-time 2015-08-25 -v8 --file-to-restore var/lib/mysql file:///home/backup/mount/v870/mysql /home/backup/mount/v870/mysqlrescue
Linux capannori 2.6.32-042stab079.6 #1 SMP Mon Aug 26 19:47:50 MSK 2013 x86_64
/usr/bin/python 2.7.9 (default, Mar 1 2015, 12:57:24)
[GCC 4.9.2]
[...]
Chain start time: Fri Mar 20 06:25:06 2015
Chain end time: Tue Aug 25 06:25:06 2015
Number of contained backup sets: 114
Total number of contained volumes: 162
[...]
Writing ib_logfile0 of type reg
Writing ib_logfile1 of type reg
Deleting /tmp/duplicity-aMzKtH-tempdir/mktemp-t4s17t-63
Processed volume 9 of 161
Error '3' patching ibdata1
Traceback (most recent call last):
  File "/usr/bin/duplicity", line 1509, in <module>
    with_tempdir(main)
  File "/usr/bin/duplicity", line 1503, in with_tempdir
    fn()
  File "/usr/bin/duplicity", line 1352, in main
    do_backup(action)
  File "/usr/bin/duplicity", line 1437, in do_backup
    restore(col_stats)
  File "/usr/bin/duplicity", line 700, in restore
    restore_get_patched_rop_iter(col_stats)):
  File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 535, in Write_ROPaths
    for ropath in rop_iter:
  File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 499, in integrate_patch_iters
    for patch_seq in collated:
  File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 379, in yield_tuples
    setrorps( overflow, elems )
  File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 368, in setrorps
    elems[i] = iter_list[i].next()
  File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 99, in filter_path_iter
    for path in path_iter:
  File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 119, in difftar2path_iter
    multivol_fileobj.close() # aborting in middle of multivol
  File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 239, in close
    if not self.addtobuffer():
  File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 222, in addtobuffer
    fp = self.tf.extractfile( self.tarinfo_list[0] )
  File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 339, in extractfile
    return self.tarfile.extractfile( tarinfo )
  File "/usr/lib/python2.7/dist-packages/duplicity/tarfile.py", line 2111, in extractfile
    self._check("r")
  File "/usr/lib/python2.7/dist-packages/duplicity/tarfile.py", line 2394, in _check
    raise IOError("%s is closed" % self.__class__.__name__)
IOError: TarFile is closed

Revision history for this message
edso (ed.so) said : 		#2

On 27.08.2015 11:16, luciano tolomei wrote:
> Question #270826 on Duplicity changed:
> https://answers.launchpad.net/duplicity/+question/270826
>
> luciano tolomei gave more information on the question:
> initially files where on glacier but failed to download so i downloaded
> them manually and i'm trying from local.
>
> my command is:
> duplicity --no-encryption --restore-time "2015-08-25" -v8 --file-to-restore var/lib/mysql file:///home/backup/mount/v870 /home/backup/mount/mysqlrescue
>
> output:
>
> [...]
> duplicity 0.6.24 (May 09, 2014)
> Args: /usr/bin/duplicity --no-encryption --restore-time 2015-08-25 -v8 --file-to-restore var/lib/mysql file:///home/backup/mount/v870/mysql /home/backup/mount/v870/mysqlrescue
> Linux capannori 2.6.32-042stab079.6 #1 SMP Mon Aug 26 19:47:50 MSK 2013 x86_64
> /usr/bin/python 2.7.9 (default, Mar 1 2015, 12:57:24)
> [GCC 4.9.2]
> [...]
> Chain start time: Fri Mar 20 06:25:06 2015
> Chain end time: Tue Aug 25 06:25:06 2015
> Number of contained backup sets: 114
> Total number of contained volumes: 162
> [...]
> Writing ib_logfile0 of type reg
> Writing ib_logfile1 of type reg
> Deleting /tmp/duplicity-aMzKtH-tempdir/mktemp-t4s17t-63
> Processed volume 9 of 161
> Error '3' patching ibdata1
> Traceback (most recent call last):
> File "/usr/bin/duplicity", line 1509, in <module>
> with_tempdir(main)
> File "/usr/bin/duplicity", line 1503, in with_tempdir
> fn()
> File "/usr/bin/duplicity", line 1352, in main
> do_backup(action)
> File "/usr/bin/duplicity", line 1437, in do_backup
> restore(col_stats)
> File "/usr/bin/duplicity", line 700, in restore
> restore_get_patched_rop_iter(col_stats)):
> File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 535, in Write_ROPaths
> for ropath in rop_iter:
> File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 499, in integrate_patch_iters
> for patch_seq in collated:
> File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 379, in yield_tuples
> setrorps( overflow, elems )
> File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 368, in setrorps
> elems[i] = iter_list[i].next()
> File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 99, in filter_path_iter
> for path in path_iter:
> File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 119, in difftar2path_iter
> multivol_fileobj.close() # aborting in middle of multivol
> File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 239, in close
> if not self.addtobuffer():
> File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 222, in addtobuffer
> fp = self.tf.extractfile( self.tarinfo_list[0] )
> File "/usr/lib/python2.7/dist-packages/duplicity/patchdir.py", line 339, in extractfile
> return self.tarfile.extractfile( tarinfo )
> File "/usr/lib/python2.7/dist-packages/duplicity/tarfile.py", line 2111, in extractfile
> self._check("r")
> File "/usr/lib/python2.7/dist-packages/duplicity/tarfile.py", line 2394, in _check
> raise IOError("%s is closed" % self.__class__.__name__)
> IOError: TarFile is closed
>

my guess would be that the backup volume is shortened. can you send a file listing w/ sizes of '/home/backup/mount/v87' ?

..ede

Revision history for this message
luciano tolomei (luciano-3) said : 		#3

i thought there was somethin wrong with the transfers so i checked with gunzip - t every gzip files and they seem ok.

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-rw-r--r-- 1 root root 13675103 mar 22 05:31 duplicity-new-signatures.20150321T052505Z.to.20150322T052504Z.sigtar.gz
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Revision history for this message
edso (ed.so) said : 		#4

On 27.08.2015 14:21, luciano tolomei wrote:
> Question #270826 on Duplicity changed:
> https://answers.launchpad.net/duplicity/+question/270826
>
> Status: Answered => Open
>
> luciano tolomei is still having a problem:
> i thought there was somethin wrong with the transfers so i checked with
> gunzip - t every gzip files and they seem ok.
>
> w-r--r-- 1 root root 7539 ago 26 12:56 duplicity-full.20150320T052506Z.manifest
 SNIP
> -rw-r--r-- 1 root root 16613978 ago 25 04:36 duplicity-new-signatures.20150824T042508Z.to.20150825T042506Z.sigtar.gz
>

can you monitor your temp space / partitions where the file is restored before it is copied to the target folder. maybe it overflows?

..ede/duply.net

Revision history for this message
luciano tolomei (luciano-3) said : 		#5

At the start i was going out of space.

Now i have created 2 different lvm volumes 80GB each.
so duplicity cache and tmp files have enough space.

i had monitored memory too and it's not even using swap.

Revision history for this message
edso (ed.so) said : 		#6

On 27.08.2015 14:46, luciano tolomei wrote:
> Question #270826 on Duplicity changed:
> https://answers.launchpad.net/duplicity/+question/270826
>
> Status: Answered => Open
>
> luciano tolomei is still having a problem:
> At the start i was going out of space.
>
> Now i have created 2 different lvm volumes 80GB each.
> so duplicity cache and tmp files have enough space.
>
> i had monitored memory too and it's not even using swap.
>

can you monitor the partition usage again one more time during the restore? just to make sure?

..ede/duply.net

Revision history for this message
luciano tolomei (luciano-3) said : 		#7

yep i will do it

Revision history for this message
luciano tolomei (luciano-3) said : 		#8

i managed to recover the backup at 2015/07/01
when i try 2015/07/10 it's not working.

i thing something weird happenend on 2015/07/04, is really strange to have 20 volumes for an incremental when usually i got only one.

It's definitely not a problem of disk space or memory.

Revision history for this message
edso (ed.so) said : 		#9

On 27.08.2015 15:56, luciano tolomei wrote:
> Question #270826 on Duplicity changed:
> https://answers.launchpad.net/duplicity/+question/270826
>
> luciano tolomei gave more information on the question:
> i managed to recover the backup at 2015/07/01
> when i try 2015/07/10 it's not working.
>
> i thing something weird happenend on 2015/07/04, is really strange to
> have 20 volumes for an incremental when usually i got only one.
>
> It's definitely not a problem of disk space or memory.
>

did you upgrade your duplicity version some time in the past?

..ede

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