Installation issue: pthreads

Dear All,

I am trying to install dolfin where I have been following the instructions written in the INSTALL file. However, a bunch of errors are coming up about the pthreads library. I would appreciate if anyone could give me a hint about successfully installing doflin.

Thanks again and I am looking forward to hearing from you. For your convenience, I am attaching cmake's output together with the two logfiles.

Best,
Stathis.

1) Cmake output:
=================================================================================
-- The C compiler identification is GNU 7.4.0
-- The CXX compiler identification is GNU 7.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
fatal: not a git repository (or any of the parent directories): .git
-- Performing Test HAVE_PIPE
-- Performing Test HAVE_PIPE - Success
-- Performing Test HAVE_PEDANTIC
-- Performing Test HAVE_PEDANTIC - Success
-- Performing Test HAVE_DEBUG
-- Performing Test HAVE_DEBUG - Success
-- Performing Test HAVE_O2_OPTIMISATION
-- Performing Test HAVE_O2_OPTIMISATION - Success
-- Found MPI_C: /opt/intel/mpi/compilers_and_libraries_2019.3.199/linux/mpi/intel64/lib/libmpifort.so;/opt/intel/mpi/compilers_and_libraries_2019.3.199/linux/mpi/intel64/lib/release/libmpi.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libdl.so
-- Found MPI_CXX: /opt/intel/mpi/compilers_and_libraries_2019.3.199/linux/mpi/intel64/lib/libmpicxx.so;/opt/intel/mpi/compilers_and_libraries_2019.3.199/linux/mpi/intel64/lib/libmpifort.so;/opt/intel/mpi/compilers_and_libraries_2019.3.199/linux/mpi/intel64/lib/release/libmpi.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libdl.so
-- Boost version: 1.65.1
-- Found the following Boost libraries:
-- timer
-- filesystem
-- program_options
-- iostreams
-- system
-- regex
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.2.90")
-- Found PythonInterp: /usr/bin/python3 (found suitable version "3.6.7", minimum required is "3")
-- Found UFC: /usr/include (Required is at least version "2019.1")
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
-- Checking for one of the modules 'craypetsc_real;PETSc'
-- Test PETSC_TEST_RUNS with shared library linking - Success
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of PetscInt
-- Check size of PetscInt - done
-- Found PETSc: TRUE (found suitable version "3.11.2", minimum required is "3.7")
-- Checking for one of the modules 'crayslepc_real;SLEPc'
-- Test SLEPC_TEST_RUNS with shared library linking - Success
-- Found SLEPc: TRUE (found suitable version "3.11.1", minimum required is "3.7")
-- ParMETIS could not be found/configured. (missing: PARMETIS_LIBRARIES PARMETIS_TEST_RUNS PARMETIS_INCLUDE_DIRS PARMETIS_VERSION PARMETIS_VERSION_OK) (Required is at least version "4.0.2")
-- SUNDIALS could not be found/configured. (missing: SUNDIALS_LIBRARIES SUNDIALS_TEST_RUNS SUNDIALS_INCLUDE_DIRS SUNDIALS_VERSION SUNDIALS_VERSION_OK) (Required is at least version "3")
-- Checking for package 'SCOTCH-PT'
-- Found SCOTCH (version 6.0.4)
-- Performing test SCOTCH_TEST_RUNS
-- Performing test SCOTCH_TEST_RUNS - Success
-- Found SCOTCH: /usr/lib/x86_64-linux-gnu/libptscotch.so;/usr/lib/x86_64-linux-gnu/libscotch.so;/usr/lib/x86_64-linux-gnu/libptscotcherr.so
-- Checking for package 'AMD'
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Checking for package 'UMFPACK'
-- Checking for package 'AMD'
-- Checking for package 'CHOLMOD'
-- Checking for package 'AMD'
-- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so
-- Looking for cheev_
-- Looking for cheev_ - found
-- Performing test CHOLMOD_TEST_RUNS - Success
-- Performing test UMFPACK_TEST_RUNS - Success
-- Found UMFPACK: /usr/lib/x86_64-linux-gnu/libumfpack.so;/usr/lib/x86_64-linux-gnu/libamd.so;/usr/lib/x86_64-linux-gnu/libblas.so;/usr/lib/x86_64-linux-gnu/libcholmod.so;/usr/lib/x86_64-linux-gnu/libamd.so;/usr/lib/x86_64-linux-gnu/libcamd.so;/usr/lib/x86_64-linux-gnu/libcolamd.so;/usr/lib/x86_64-linux-gnu/libccolamd.so;/usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so;/usr/lib/x86_64-linux-gnu/libblas.so;/usr/lib/gcc/x86_64-linux-gnu/7/libgfortran.so;/usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so;/usr/lib/gcc/x86_64-linux-gnu/7/libgfortran.so
-- Checking for package 'CHOLMOD'
-- Checking for package 'AMD'
-- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so
-- Performing test CHOLMOD_TEST_RUNS - Success
-- Found CHOLMOD: /usr/lib/x86_64-linux-gnu/libcholmod.so;/usr/lib/x86_64-linux-gnu/libamd.so;/usr/lib/x86_64-linux-gnu/libcamd.so;/usr/lib/x86_64-linux-gnu/libcolamd.so;/usr/lib/x86_64-linux-gnu/libccolamd.so;/usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so;/usr/lib/x86_64-linux-gnu/libblas.so;/usr/lib/gcc/x86_64-linux-gnu/7/libgfortran.so
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.0.1") found components: C
-- Checking for Trilinos
CMake Error at /usr/local/lib/cmake/Trilinos/TrilinosConfig.cmake:174 (LIST):
  LIST sub-command REMOVE_DUPLICATES requires list to be present.
Call Stack (most recent call first):
  CMakeLists.txt:382 (find_package)

CMake Error at /usr/local/lib/cmake/Trilinos/TrilinosConfig.cmake:182 (LIST):
  LIST sub-command REMOVE_DUPLICATES requires list to be present.
Call Stack (most recent call first):
  CMakeLists.txt:382 (find_package)

-- Trilinos version 12.12.1 found. Checking for components
-- Trilinos found, but required package Tpetra not found. Trilinos will be disabled.
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11")
-- The following features have been enabled:

 * BUILD_SHARED_LIBS, Build DOLFIN with shared libraries.
 * DOLFIN_AUTO_DETECT_MPI, Detect MPI automatically (turn this off to use the MPI compiler wrappers directly via setting CXX, CXX, FC).
 * DOLFIN_WITH_LIBRARY_VERSION, Build with library version information.
 * DOLFIN_ENABLE_DOCS, Enable generation of documentation.
 * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath.
 * DOLFIN_ENABLE_MPI, Compile with support for MPI.
 * DOLFIN_ENABLE_PETSC, Compile with support for PETSc.
 * DOLFIN_ENABLE_SLEPC, Compile with support for SLEPc.
 * DOLFIN_ENABLE_TRILINOS, Compile with support for Trilinos.
 * DOLFIN_ENABLE_UMFPACK, Compile with support for UMFPACK.
 * DOLFIN_ENABLE_CHOLMOD, Compile with support for CHOLMOD.
 * DOLFIN_ENABLE_SCOTCH, Compile with support for SCOTCH.
 * DOLFIN_ENABLE_PARMETIS, Compile with support for ParMETIS.
 * DOLFIN_ENABLE_SUNDIALS, Compile with support for SUNDIALS.
 * DOLFIN_ENABLE_ZLIB, Compile with support for zlib.
 * DOLFIN_ENABLE_HDF5, Compile with support for HDF5.

-- The following OPTIONAL packages have been found:

 * MPI, Message Passing Interface (MPI)
   Enables DOLFIN to run in parallel with MPI
 * PETSc (required version >= 3.7), Portable, Extensible Toolkit for Scientific Computation, <https://www.mcs.anl.gov/petsc/>
   Enables the PETSc linear algebra backend
 * SLEPc (required version >= 3.7), Scalable Library for Eigenvalue Problem Computations, <http://slepc.upv.es/>
 * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, <https://www.labri.fr/perso/pelegrin/scotch>
   Enables parallel graph partitioning
 * UMFPACK, Sparse LU factorization library, <http://faculty.cse.tamu.edu/davis/suitesparse.html>
 * BLAS, Basic Linear Algebra Subprograms, <http://netlib.org/blas/>
 * Threads
 * CHOLMOD, Sparse Cholesky factorization library for sparse matrices, <http://faculty.cse.tamu.edu/davis/suitesparse.html>
 * HDF5, Hierarchical Data Format 5 (HDF5), <https://www.hdfgroup.org/HDF5>
 * ZLIB, Compression library, <http://www.zlib.net>

-- The following REQUIRED packages have been found:

 * Boost, Boost C++ libraries, <http://www.boost.org>
 * Eigen3 (required version >= 3.2.90), Lightweight C++ template library for linear algebra, <http://eigen.tuxfamily.org>
 * PythonInterp (required version >= 3), Interactive high-level object-oriented language, <http://www.python.org>
 * UFC (required version >= 2019.1), Unified language for form-compilers (part of FFC), <https://bitbucket.org/fenics-project/ffc>
 * PkgConfig

-- The following features have been disabled:

 * CMAKE_USE_RELATIVE_PATHS, Use relative paths in makefiles and projects.
 * DOLFIN_ENABLE_CODE_COVERAGE, Enable code coverage.
 * DOLFIN_ENABLE_BENCHMARKS, Enable benchmark programs.
 * DOLFIN_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages.
 * DOLFIN_DEPRECATION_ERROR, Turn deprecation warnings into errors.
 * DOLFIN_ENABLE_GEOMETRY_DEBUGGING, Enable geometry debugging.

-- The following OPTIONAL packages have not been found:

 * SUNDIALS (required version >= 3), SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers, <http://computation.llnl.gov/projects/sundials>
   Provides robust time integrators and nonlinear solvers that can easily be incorporated into existing simulation codes.

--
-- Generating demo source files from reStructuredText
-- --------------------------------------------------
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/auto-adaptive-poisson/cpp/main.cpp
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/biharmonic/cpp/main.cpp
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/built-in-meshes/cpp/main.cpp
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/eigenvalue/cpp/main.cpp
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/hyperelasticity/cpp/main.cpp
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/mixed-poisson/cpp/main.cpp
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/main.cpp
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/poisson/cpp/main.cpp
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/auto-adaptive-poisson/cpp/AdaptivePoisson.ufl
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/biharmonic/cpp/Biharmonic.ufl
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/eigenvalue/cpp/StiffnessMatrix.ufl
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/hyperelasticity/cpp/HyperElasticity.ufl
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/mixed-poisson/cpp/MixedPoisson.ufl
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/P1.ufl
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/P3.ufl
extract written to /home/stathis/Documents/dolfin-2019.1.0.post0/demo/documented/poisson/cpp/Poisson.ufl
-- Performing Test HAVE_NO_MULTLINE
-- Performing Test HAVE_NO_MULTLINE - Success
-- Configuring incomplete, errors occurred!
See also "/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeOutput.log".
See also "/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeError.log".

2) CMakeError.log:
=================================================================================
Determining if the pthread_create exist failed with the following output:
Change Dir: /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_be779/fast"
/usr/bin/make -f CMakeFiles/cmTC_be779.dir/build.make CMakeFiles/cmTC_be779.dir/build
make[1]: Entering directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_be779.dir/CheckSymbolExists.c.o
/usr/bin/cc -I/usr/include/scotch -I/opt/intel/mpi/compilers_and_libraries_2019.3.199/linux/mpi/intel64/include -o CMakeFiles/cmTC_be779.dir/CheckSymbolExists.c.o -c /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c
Linking C executable cmTC_be779
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_be779.dir/link.txt --verbose=1
/usr/bin/cc CMakeFiles/cmTC_be779.dir/CheckSymbolExists.c.o -o cmTC_be779
CMakeFiles/cmTC_be779.dir/CheckSymbolExists.c.o: In function `main':
CheckSymbolExists.c:(.text+0x1b): undefined reference to `pthread_create'
collect2: error: ld returned 1 exit status
CMakeFiles/cmTC_be779.dir/build.make:97: recipe for target 'cmTC_be779' failed
make[1]: *** [cmTC_be779] Error 1
make[1]: Leaving directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_be779/fast' failed
make: *** [cmTC_be779/fast] Error 2

File /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c:
/* */
#include <pthread.h>

int main(int argc, char** argv)
{
  (void)argv;
#ifndef pthread_create
  return ((int*)(&pthread_create))[argc];
#else
  (void)argc;
  return 0;
#endif
}

Determining if the function pthread_create exists in the pthreads failed with the following output:
Change Dir: /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_932db/fast"
/usr/bin/make -f CMakeFiles/cmTC_932db.dir/build.make CMakeFiles/cmTC_932db.dir/build
make[1]: Entering directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_932db.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/cmTC_932db.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.10/Modules/CheckFunctionExists.c
Linking C executable cmTC_932db
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_932db.dir/link.txt --verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/cmTC_932db.dir/CheckFunctionExists.c.o -o cmTC_932db -lpthreads
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
CMakeFiles/cmTC_932db.dir/build.make:97: recipe for target 'cmTC_932db' failed
make[1]: *** [cmTC_932db] Error 1
make[1]: Leaving directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_932db/fast' failed
make: *** [cmTC_932db/fast] Error 2

3) CMakeOutput.log
=================================================================================
The system is: Linux - 4.15.0-51-generic - x86_64
Compiling the C compiler identification source file "CMakeCCompilerId.c" succeeded.
Compiler: /usr/bin/cc
Build flags:
Id flags:

The output was:
0

Compilation of the C compiler identification source "CMakeCCompilerId.c" produced "a.out"

The C compiler identification is GNU, found in "/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/3.10.2/CompilerIdC/a.out"

Compiling the CXX compiler identification source file "CMakeCXXCompilerId.cpp" succeeded.
Compiler: /usr/bin/c++
Build flags:
Id flags:

The output was:
0

Compilation of the CXX compiler identification source "CMakeCXXCompilerId.cpp" produced "a.out"

The CXX compiler identification is GNU, found in "/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/3.10.2/CompilerIdCXX/a.out"

Determining if the C compiler works passed with the following output:
Change Dir: /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_dd7ac/fast"
/usr/bin/make -f CMakeFiles/cmTC_dd7ac.dir/build.make CMakeFiles/cmTC_dd7ac.dir/build
make[1]: Entering directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_dd7ac.dir/testCCompiler.c.o
/usr/bin/cc -o CMakeFiles/cmTC_dd7ac.dir/testCCompiler.c.o -c /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp/testCCompiler.c
Linking C executable cmTC_dd7ac
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_dd7ac.dir/link.txt --verbose=1
/usr/bin/cc CMakeFiles/cmTC_dd7ac.dir/testCCompiler.c.o -o cmTC_dd7ac
make[1]: Leaving directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'

Detecting C compiler ABI info compiled with the following output:
Change Dir: /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_d3a9a/fast"
/usr/bin/make -f CMakeFiles/cmTC_d3a9a.dir/build.make CMakeFiles/cmTC_d3a9a.dir/build
make[1]: Entering directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_d3a9a.dir/CMakeCCompilerABI.c.o
/usr/bin/cc -o CMakeFiles/cmTC_d3a9a.dir/CMakeCCompilerABI.c.o -c /usr/share/cmake-3.10/Modules/CMakeCCompilerABI.c
Linking C executable cmTC_d3a9a
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_d3a9a.dir/link.txt --verbose=1
/usr/bin/cc -v CMakeFiles/cmTC_d3a9a.dir/CMakeCCompilerABI.c.o -o cmTC_d3a9a
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make[1]: Entering directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_ab8b6.dir/feature_tests.cxx.o
/usr/bin/c++ -std=c++1z -o CMakeFiles/cmTC_ab8b6.dir/feature_tests.cxx.o -c /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/feature_tests.cxx
Linking CXX executable cmTC_ab8b6
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_ab8b6.dir/link.txt --verbose=1
/usr/bin/c++ CMakeFiles/cmTC_ab8b6.dir/feature_tests.cxx.o -o cmTC_ab8b6
make[1]: Leaving directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'

    Feature record: CXX_FEATURE:1cxx_aggregate_default_initializers
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Detecting CXX [-std=c++14] compiler features compiled with the following output:
Change Dir: /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_afe63/fast"
/usr/bin/make -f CMakeFiles/cmTC_afe63.dir/build.make CMakeFiles/cmTC_afe63.dir/build
make[1]: Entering directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_afe63.dir/feature_tests.cxx.o
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Linking CXX executable cmTC_afe63
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make[1]: Leaving directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'

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Detecting CXX [-std=c++11] compiler features compiled with the following output:
Change Dir: /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_91a83/fast"
/usr/bin/make -f CMakeFiles/cmTC_91a83.dir/build.make CMakeFiles/cmTC_91a83.dir/build
make[1]: Entering directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_91a83.dir/feature_tests.cxx.o
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Linking CXX executable cmTC_91a83
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_91a83.dir/link.txt --verbose=1
/usr/bin/c++ CMakeFiles/cmTC_91a83.dir/feature_tests.cxx.o -o cmTC_91a83
make[1]: Leaving directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'

    Feature record: CXX_FEATURE:0cxx_aggregate_default_initializers
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Detecting CXX [-std=c++98] compiler features compiled with the following output:
Change Dir: /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_f4488/fast"
/usr/bin/make -f CMakeFiles/cmTC_f4488.dir/build.make CMakeFiles/cmTC_f4488.dir/build
make[1]: Entering directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_f4488.dir/feature_tests.cxx.o
/usr/bin/c++ -std=c++98 -o CMakeFiles/cmTC_f4488.dir/feature_tests.cxx.o -c /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/feature_tests.cxx
Linking CXX executable cmTC_f4488
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_f4488.dir/link.txt --verbose=1
/usr/bin/c++ CMakeFiles/cmTC_f4488.dir/feature_tests.cxx.o -o cmTC_f4488
make[1]: Leaving directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'

    Feature record: CXX_FEATURE:0cxx_aggregate_default_initializers
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Performing C++ SOURCE FILE Test HAVE_PIPE succeeded with the following output:
Change Dir: /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_00a31/fast"
/usr/bin/make -f CMakeFiles/cmTC_00a31.dir/build.make CMakeFiles/cmTC_00a31.dir/build
make[1]: Entering directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_00a31.dir/src.cxx.o
/usr/bin/c++ -DHAVE_PIPE -pipe -o CMakeFiles/cmTC_00a31.dir/src.cxx.o -c /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp/src.cxx
Linking CXX executable cmTC_00a31
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_00a31.dir/link.txt --verbose=1
/usr/bin/c++ -DHAVE_PIPE CMakeFiles/cmTC_00a31.dir/src.cxx.o -o cmTC_00a31
make[1]: Leaving directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'

Source file was:
int main() { return 0; }
Performing C++ SOURCE FILE Test HAVE_PEDANTIC succeeded with the following output:
Change Dir: /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_285e4/fast"
/usr/bin/make -f CMakeFiles/cmTC_285e4.dir/build.make CMakeFiles/cmTC_285e4.dir/build
make[1]: Entering directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_285e4.dir/src.cxx.o
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Linking CXX executable cmTC_285e4
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_285e4.dir/link.txt --verbose=1
/usr/bin/c++ -DHAVE_PEDANTIC CMakeFiles/cmTC_285e4.dir/src.cxx.o -o cmTC_285e4
make[1]: Leaving directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'

Source file was:
int main() { return 0; }
Performing C++ SOURCE FILE Test HAVE_DEBUG succeeded with the following output:
Change Dir: /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_8ff42/fast"
/usr/bin/make -f CMakeFiles/cmTC_8ff42.dir/build.make CMakeFiles/cmTC_8ff42.dir/build
make[1]: Entering directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_8ff42.dir/src.cxx.o
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Linking CXX executable cmTC_8ff42
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_8ff42.dir/link.txt --verbose=1
/usr/bin/c++ -DHAVE_DEBUG CMakeFiles/cmTC_8ff42.dir/src.cxx.o -o cmTC_8ff42
make[1]: Leaving directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'

Source file was:
int main() { return 0; }
Performing C++ SOURCE FILE Test HAVE_O2_OPTIMISATION succeeded with the following output:
Change Dir: /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_443f2/fast"
/usr/bin/make -f CMakeFiles/cmTC_443f2.dir/build.make CMakeFiles/cmTC_443f2.dir/build
make[1]: Entering directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_443f2.dir/src.cxx.o
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Linking CXX executable cmTC_443f2
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_443f2.dir/link.txt --verbose=1
/usr/bin/c++ -DHAVE_O2_OPTIMISATION CMakeFiles/cmTC_443f2.dir/src.cxx.o -o cmTC_443f2
make[1]: Leaving directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'

Source file was:
int main() { return 0; }
Determining if the include file sys/types.h exists passed with the following output:
Change Dir: /home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_e5c01/fast"
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Building C object CMakeFiles/cmTC_63e06.dir/CheckIncludeFile.c.o
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Building C object CMakeFiles/cmTC_98d3b.dir/CheckIncludeFile.c.o
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Building C object CMakeFiles/cmTC_2838e.dir/PETSC_INT_SIZE.c.o
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Building C object CMakeFiles/cmTC_3259d.dir/CheckFunctionExists.c.o
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Building C object CMakeFiles/cmTC_8039c.dir/CheckIncludeFile.c.o
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Linking C executable cmTC_8039c
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Determining if the function pthread_create exists in the pthread passed with the following output:
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Run Build Command:"/usr/bin/make" "cmTC_030a1/fast"
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Building C object CMakeFiles/cmTC_030a1.dir/CheckFunctionExists.c.o
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Linking C executable cmTC_030a1
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Determining if the function cheev_ exists passed with the following output:
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Run Build Command:"/usr/bin/make" "cmTC_f1b8b/fast"
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Building C object CMakeFiles/cmTC_f1b8b.dir/CheckFunctionExists.c.o
/usr/bin/cc -I/usr/include/scotch -I/opt/intel/mpi/compilers_and_libraries_2019.3.199/linux/mpi/intel64/include -DCHECK_FUNCTION_EXISTS=cheev_ -o CMakeFiles/cmTC_f1b8b.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.10/Modules/CheckFunctionExists.c
Linking C executable cmTC_f1b8b
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Performing C++ SOURCE FILE Test HAVE_NO_MULTLINE succeeded with the following output:
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Run Build Command:"/usr/bin/make" "cmTC_e10d6/fast"
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Building CXX object CMakeFiles/cmTC_e10d6.dir/src.cxx.o
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Linking CXX executable cmTC_e10d6
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make[1]: Leaving directory '/home/stathis/Documents/dolfin-2019.1.0.post0/build/CMakeFiles/CMakeTmp'

Source file was:
int main() { return 0; }