I'm using Archlinux, and compiling DOLFIN gives me the following errors: -- The C compiler identification is GNU 4.7.0 -- The CXX compiler identification is GNU 4.7.0 -- Check for working C compiler: /usr/lib/ccache/bin/gcc -- Check for working C compiler: /usr/lib/ccache/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ -- Check for working CXX compiler: /usr/bin/g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DISABLE_PEDANTIC_CHECKS -- Performing Test HAVE_DISABLE_PEDANTIC_CHECKS - Success -- Performing Test HAVE_STD -- Performing Test HAVE_STD - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found MPI_C: /usr/lib/openmpi/libmpi.so;/usr/lib/libdl.so;/usr/lib/libhwloc.so -- Found MPI_CXX: /usr/lib/openmpi/libmpi_cxx.so;/usr/lib/openmpi/libmpi.so;/usr/lib/libdl. -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp -- Performing Test OPENMP_UINT_TEST_RUNS -- Performing Test OPENMP_UINT_TEST_RUNS - Success -- Boost version: 1.49.0 -- Found the following Boost libraries: -- filesystem -- program_options -- system -- thread -- iostreams -- math_tr1 -- mpi -- serialization -- UFC version: 2.0.5 -- Checking for package 'Armadillo' -- Performing Test ARMADILLO_TEST_RUNS -- Performing Test ARMADILLO_TEST_RUNS - Success -- Found Armadillo: /usr/lib64/libarmadillo.so -- Found LibXml2: /usr/lib/libxml2.so (found version "2.7.8") -- Found PythonInterp: /usr/bin/python2 (found version "2.7.3") -- Found PythonLibs: /usr/lib/libpython2.7.so (found version "2.7.3") -- NumPy headers found -- Found SWIG: /usr/bin/swig (found version "2.0.6") -- Performing Test PARMETIS_TEST_RUNS -- Performing Test PARMETIS_TEST_RUNS - Success -- Found ParMETIS: /usr/lib/libparmetis.so;/usr/lib/libmetis.so -- Checking for package 'SCOTCH-PT' -- SCOTCH could not be found. Be sure to set SCOTCH_DIR. (missing: SCOTCH_LIBRARIES SCOTCH_INCLUDE_DIRS SCOTCH_TEST_ -- Checking for package 'AMD' -- Found AMD: /usr/lib/libamd.a -- Checking for package 'BLAS' -- Found BLAS: /usr/lib/libblas.so -- Checking for package 'UMFPACK' -- Checking for package 'AMD' -- Checking for package 'BLAS' -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Checking for package 'BLAS' -- Checking for package 'LAPACK' -- Found LAPACK: /usr/lib/liblapack.so -- Performing Test CHOLMOD_TEST_RUNS -- Performing Test CHOLMOD_TEST_RUNS - Success -- Found CHOLMOD: /usr/lib/libcholmod.a;/usr/lib/libamd.a;/usr/lib/libcamd.a;/usr/lib/libcolamd.a;/usr/lib/libccolamd.a;/usr/lib/libblas.so;/usr/lib/libparmetis.so;/usr/lib/libmetis.so;/usr/lib/liblapack.so -- Performing Test UMFPACK_TEST_RUNS -- Performing Test UMFPACK_TEST_RUNS - Success -- Found UMFPACK: /usr/include -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Checking for package 'BLAS' -- Checking for package 'LAPACK' -- Checking for Trilinos -- Trilinos version 10.10.1 found. Checking for components -- All necessary Trilinos components found. Trilinos will be enabled -- Checking for package 'MTL4' -- Checking for package 'BLAS' -- Performing Test MTL4_TEST_RUNS -- Performing Test MTL4_TEST_RUNS - Failed -- MTL4 could not be found. Be sure to set MTL4_DIR (missing: MTL4_TEST_RUNS) -- Checking for package 'PETSc' -- PETSC_DIR is /usr/petsc/arch-linux2-cxx-opt -- PETSC_ARCH is empty -- Found petscconf.h -- Include directory /usr/include/include does not exist -- Performing Test PETSC_TEST_RUNS -- Performing Test PETSC_TEST_RUNS - Success -- PETSc test runs -- Found PETSc: /usr/petsc/arch-linux2-cxx-opt/lib/libpetsc.so -- Checking for package 'SLEPc' -- SLEPC_DIR is SLEPC_DIR-NOTFOUND -- SLEPc could not be found. Be sure to set SLEPC_DIR, PETSC_DIR, and PETSC_ARCH. (missing: SLEPC_LIBRARIES SLEPC_DIR SLEPC -- Checking for package 'CGAL' -- Performing Test CGAL_TEST_RUNS -- Performing Test CGAL_TEST_RUNS - Success -- Found CGAL: /usr/lib/libCGAL.so;/usr/lib/libgmpxx.so;/usr/lib/libmpfr.so;/usr/lib/libgmp.so;/usr/lib/libboost_thread.so -- Found ZLIB: /usr/lib/libz.so (found version "1.2.6") -- Checking for package 'CPPUNIT' -- Found CPPUNIT: /usr/lib/libcppunit.so -- Checking for package 'Sphinx' -- Found Sphinx: /usr/bin/sphinx-build (Required is at least version "1.0.7") -- -- The following optional packages were found: -- ------------------------------------------- -- (OK) OPENMP -- (OK) MPI -- (OK) PETSC -- (OK) TRILINOS -- (OK) UMFPACK -- (OK) CHOLMOD -- (OK) PARMETIS -- (OK) CGAL -- (OK) ZLIB -- (OK) PYTHON -- (OK) SPHINX -- -- The following optional packages could not be found: -- --------------------------------------------------- -- (**) SLEPC -- (**) MTL4 -- (**) SCOTCH -- -- Enabling generation of documentation. -- Initializing sphinx projects -- Enabling generation of html-documentation -- Configuring done -- Generating done -- Build files have been written to: /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/bui Scanning dependencies of target dolfin [ 0%] [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/LocalAssembler.cpp.o [ 1%] [ 2%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o [ 2%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/SpecialFacetFunction.cpp.o Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o [ 2%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o [ 5%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o [ 5%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o [ 5%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o [ 8%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o [ 8%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/init.cpp.o [ 8%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/MPI.cpp.o [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/utils.cpp.o [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Variable.cpp.o [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/defines.cpp.o [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/timing.cpp.o [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/AssemblerTools.cpp.o [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o [ 13%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o [ 13%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Assembler.cpp.o [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/solve.cpp.o [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o [ 16%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o [ 16%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PointSource.cpp.o [ 16%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/OpenMpAssembler.cpp.o [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Equation.cpp.o [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DomainAssigner.cpp.o [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble.cpp.o [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/UFC.cpp.o [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/BoundaryCondition.cpp.o [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PeriodicBC.cpp.o [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMap.cpp.o [ 22%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/VariationalProblem.cpp.o [ 22%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Form.cpp.o [ 22%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Function.cpp.o [ 24%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SubSpace.cpp.o [ 24%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Constant.cpp.o [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Expression.cpp.o [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/MatrixRenumbering.cpp.o [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o [ 30%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphInterface.cpp.o [ 30%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o [ 30%] Building CXX object dolfin/CMakeFiles/dolfin.dir/intersection/Triangle_3_Tetrahedron_3_do_intersect_SCK.cpp.o [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/intersection/PrimitiveIntersector.cpp.o [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/intersection/IntersectionOperator.cpp.o [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/RAWFile.cpp.o [ 33%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XYZFile.cpp.o [ 33%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/GenericFile.cpp.o [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/BinaryFile.cpp.o [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/pugixml.cpp.o /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/io/pugixml.cpp: In member function ‘virtual void pugi::xml_writer_file::write(const void*, size_t) /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/io/pugixml.cpp:3250:50: warning: ignoring return value of ‘size_t fwrite(const void*, size_t, sizeibute warn_unused_result [-Wunused-result] [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLLocalMeshSAX.cpp.o In file included from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/added_intersection_3.h:34:0, from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/c from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperatorImplementati from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/Segment_3_Tetrahedron_3_intersection.h: In instantiation of ‘bool CGAL::internal::do_ment_3&, const typename K::Tetrahedron_3&, const K&) [with K = CGAL::Simple_cartesian; typename K::Segment_3 = CGAL::Segment_3 >]’: /usr/include/CGAL/Kernel/function_objects.h:2044:48: required from ‘CGAL::CommonKernelFunctors::Do_intersect_3::result_type CGAL::CommonKernelFunctors:const T1&, const T2&) const [with T1 = CGAL::Segment_3 >; T2 = CGAL::Tetrahedron_3 >; K = CGALL::CommonKernelFunctors::Do_intersect_3::result_type = bool]’ /usr/include/CGAL/AABB_traits.h:156:62: required from ‘bool CGAL::AABB_traits::Do_intersect::operator()(const Query&, const PrGAL::Segment_3 >; GeomTraits = CGAL::Simple_cartesian; AABB_primitive = dolfin::MeshPrimitive > >; CGAL::AABB_traits::Primitive = dolfin::MeshPrimitive > >]’ /usr/include/CGAL/internal/AABB_tree/AABB_traversal_traits.h:172:5: required from ‘void CGAL::internal::AABB_tree::Listing_primitive_traits, dolfin::MeshPrimitive > > >; Query = CGAL::Segment_3 >; Output_iterator = std::insert_iterator >; CGg_primitive_traits::Primitive = dolfin::MeshPrimitive::traversal(const Query&, Traversal_traits&, std::size_t) const [with Taits = CGAL::internal::AABB_tree::Listing_primitive_traits, dolfin::MeshPrimitive > > >, CGAL::Segment_3 >, std::insert_iterator > >; Query = CGAL::Segment_3; AABBTraits = CGAL::AABB_traits, dolfin::MeshPrimitive > > >; = long unsigned int]’ /usr/include/CGAL/AABB_tree.h:208:5: required from ‘void CGAL::AABB_tree::traversal(const Query&, Traversal_traits&) const [with Query = CGAL::Segment_3 >; Traversal_traits = CGAL::internal::AABB_tree::Listing_primitive_traits, dolfin::MeshPrimitive > > >, CGAL::Segment_3 >, std::insert_iterator > >; AABBTraits = CGALts, dolfin::MeshPrimitive::all_intersected_primitives(const Query&, OutputIterator) const [with Query = Ct_3 >; OutputIterator = std::insert_iterator >; AABBTraits = CGAL::AABB_traits, dolfin::ve > > >]’ /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperatorImplementation.h:161:15: required from ‘void dolfin::IntersectionOperatorImplementaitive, Kernel>::all_intersected_entities(const dolfin::MeshEntity&, std::vector&) const [with Primitive = dolfin::TetrahedronCell; Kernel = CGAL::Simple_cartesian /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp:242:1: required from her /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/Segment_3_Tetrahedron_3_intersection.h:61:7: error: ‘dolfin_error’ was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive] In file included from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/log/dolfin_log from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/log/log.h:86:8: note: ‘void dolfin::dolfin_error(std::string, std::string, std::string, ...)’ declared here, later in the translation unit In file included from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/added_intersection_3.h:3 from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/cgal_incl from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperatorImplementati from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/Segment_3_Tetrahedron_3_intersection.h: In instantiation of ‘bool CGAL::internal::do_intersect(const typename K::Tetrahedron_3&, const typename K::Segment_3&, const K&) [with K = CGAL::Simple_cartesian; typename K::Tetrahedron_3 = CGAL::Tetrahedron_3 >; typename K::Segment_3 = CGAL::Segment_3 >]’: /usr/include/CGAL/Kernel/function_objects.h:2044:48: required from ‘CGAL::CommonKernelFunctors::Do_intersect_3::result_type CGAL::CommonKernelFunctors::Do_intersect_3::operator()(const T1&, const T2&) const [with T1 = CGAL::Tetrahedron_3 >; T2 = CGAL::Segment_3 >; K = CGAL::Simple_cartesian; CGAL::CommonKernelFunctors::Do_intersect_3::result_type = bool]’ /usr/include/CGAL/AABB_traits.h:156:62: required from ‘bool CGAL::AABB_traits::Do_intersect::operator()(const Query&, const Primitive&) const [with Query = CGAL::Tetrahedron_3 >; GeomTraits = CGAL::Simple_cartesian; AABB_primitive = dolfin::MeshPrimitive > >; CGAL::AABB_traits::Primitive = dolfin::MeshPrimitive > >]’ /usr/include/CGAL/internal/AABB_tree/AABB_traversal_traits.h:172:5: required from ‘void CGAL::internal::AABB_tree::Listing_primitive_traits::intersection(const Query&, const Primitive&) [with AABBTraits = CGAL::AABB_traits, dolfin::MeshPrimitive > > >; Query = CGAL::Tetrahedron_3 >; Output_iterator = std::insert_iterator >; CGAL::internal::AABB_tree::Listing_primitive_traits::Primitive = dolfin::MeshPrimitive::traversal(const Query&, Traversal_traits&, std::size_t) const [with Traversal_traits = CGAL::internal::AABB_tree::Listing_primitive_traits, dolfin::MeshPrimitive > > >, CGAL::Tetrahedron_3 >, std::insert_iterator > >; Query = CGAL::Tetrahedron_3 >; AABBTraits = CGAL::AABB_traits, dolfin::MeshPrimitive > > >; std::size_t = long unsigned int]’ /usr/include/CGAL/AABB_tree.h:208:5: required from ‘void CGAL::AABB_tree::traversal(const Query&, Traversal_traits&) const [with Query = CGAL::Tetrahedron_3 >; Traversal_traits = CGAL::internal::AABB_tree::Listing_primitive_traits, dolfin::MeshPrimitive > > >, CGAL::Tetrahedron_3 >, std::insert_iterator > >; AABBTraits = CGAL::AABB_traits, dolfin::MeshPrimitive > > >] /usr/include/CGAL/AABB_tree.h:448:3: required from ‘OutputIterator CGAL::AABB_tree::all_intersected_primitives(const Query&, OutputIterator) const [with Query = CGAL::Tetrahedron_3 >; OutputIterator = std::insert_iterator >; AABBTraits = CGAL::AABB_traits, dolfin::MeshPrimitive > > >]’ /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperatorImplementation.h:163:15: required from ‘void dolfin::IntersectionOperatorImplementation_d::all_intersected_entities(const dolfin::MeshEntity&, std::vector&) const [with Primitive = dolfin::IntervalCell; Kernel = CGAL::Simple_cartesian >; typename K::Segment_3 = CGAL::Segment_3 > >; typename K::Tetrahedron_3 = CGAL::Tetrahedron_3 > >]’: /usr/include/CGAL/Kernel/function_objects.h:2044:48: required from ‘CGAL::CommonKernelFunctors::Do_intersect_3::result_type CGAL::CommonKernelFunctors::Do_intersect_3::operator()(const T1&, const T2&) const [with T1 = CGAL::Segment_3 > >; T2 = CGAL::Tetrahedron_3 > >; K = CGAL::Simple_cartesian >; CGAL::CommonKernelFunctors::Do_intersect_3::result_type = CGAL::Uncertain::result_type CGAL::Filtered_predicate::operator()(const A1&, const A2&) const [with A1 = CGAL::Segment_3; A2 = CGAL::Tetrahedron_3; EP = CGAL::CommonKernelFunctors::Do_intersect_3 >; AP = CGAL::CommonKernelFunctors::Do_intersect_3 > >; C2E = CGAL::Cartesian_converter, CGAL::Epick>, CGAL::Simple_cartesian, CGAL::NT_converter >; C2A = CGAL::Cartesian_converter, CGAL::Epick>, CGAL::Simple_cartesian >, CGAL::NT_converter > >; bool Protection = true; CGAL::Filtered_predicate::result_type = boo /usr/include/CGAL/AABB_traits.h:156:62: required from ‘bool CGAL::AABB_traits::Do_intersect::operator()(const Query&, const Primitive&) const [with Query = CGAL::Segment_3; GeomTraits = CGAL::Epick; AABB_primitive = dolfin::MeshPrimitive >; CGAL::AABB_traits::Primitive = dolfin::MeshPrimitive >] /usr/include/CGAL/internal/AABB_tree/AABB_traversal_traits.h:172:5: required from ‘void CGAL::internal::AABB_tree::Listing_primitive_traits::intersection(const Query&, const Primitive&) [with AABBTraits = CGAL::AABB_traits > >; Query = CGAL::Segment_3; Output_iterator = std::insert_iterator >; CGAL::internal::AABB_tree::Listing_primitive_traits::Primitive = dolfin::MeshPrimitive > /usr/include/CGAL/internal/AABB_tree/AABB_node.h:166:5: required from ‘void CGAL::AABB_node::traversal(const Query&, Traversal_traits&, std::size_t) const [with Traversal_traits = CGAL::internal::AABB_tree::Listing_primitive_traits > >, CGAL::Segment_3, std::insert_iterator > >; Query = CGAL::Segment_3; AABBTraits = CGAL::AABB_traits > >; std::size_t = long unsigned int]’ /usr/include/CGAL/AABB_tree.h:208:5: required from ‘void CGAL::AABB_tree::traversal(const Query&, Traversal_traits&) const [with Query = CGAL::Segment_3; Traversal_traits = CGAL::internal::AABB_tree::Listing_primitive_traits > >, CGAL::Segment_3, std::insert_iterator > >; AABBTraits = CGAL::AABB_traits > >]’ /usr/include/CGAL/AABB_tree.h:448:3: required from ‘OutputIterator CGAL::AABB_tree::all_intersected_primitives(const Query&, OutputIterator) const [with Query = CGAL::Segment_3; OutputIterator = std::insert_iterator >; AABBTraits = CGAL::AABB_traits > >]’ /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperatorImplementation.h:161:15: required from ‘void dolfin::IntersectionOperatorImplementation_d::all_intersected_entities(const dolfin::MeshEntity&, std::vector&) const [with Primitive = dolfin::TetrahedronCell; Kernel = CG /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp:242:1: required from here /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/Segment_3_Tetrahedron_3_intersection.h:61:7: error: ‘dolfin_error’ was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive] In file included from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/log/dolfin_log.h: from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp:2 /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/log/log.h:86:8: note: ‘void dolfin::dolfin_error(std::string, std::string, std::string, ...)’ declared here, later in the translation unit In file included from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/added_intersection_3.h:34: from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/cgal_includes from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperatorImplementati from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp:3 /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/Segment_3_Tetrahedron_3_intersection.h: In instantiation of ‘bool CGAL::internal::do_intersect(const typename K::Segment_3&, const typename K::Tetrahedron_3&, const K&) [with K = CGAL::Simple_cartesian; typename K::Segment_3 = CGAL::Segment_3 >; typename K::Tetrahedron_3 = CGAL::Tetrahedron_3 >]’: /usr/include/CGAL/Kernel/function_objects.h:2044:48: required from ‘CGAL::CommonKernelFunctors::Do_intersect_3::result_type CGAL::CommonKernelFunctors::Do_intersect_3::operator()(const T1&, const T2&) const [with T1 = CGAL::Segment_3 >; T2 = CGAL::Tetrahedron_3 >; K = CGAL::Simple_cartesian; CGAL::CommonKernelFunctors::Do_intersect_3::result_type = bool]’ /usr/include/CGAL/Filtered_predicate.h:217:31: required from ‘CGAL::Filtered_predicate::result_type CGAL::Filtered_predicate::operator()(const A1&, const A2&) const [with A1 = CGAL::Segment_3; A2 = CGAL::Tetrahedron_3; EP = CGAL::CommonKernelFunctors::Do_intersect_3 >; AP = CGAL::CommonKernelFunctors::Do_intersect_3 > >; C2E = CGAL::Cartesian_converter, CGAL::Epick>, CGAL::Simple_cartesian, CGAL::NT_converter >; C2A = CGAL::Cartesian_converter, CGAL::Epick>, CGAL::Simple_cartesian >, CGAL::NT_converter > >; bool Protection = true; CGAL::Filtered_predicate::result_type = boo /usr/include/CGAL/AABB_traits.h:156:62: required from ‘bool CGAL::AABB_traits::Do_intersect::operator()(const Query&, const Primitive&) const [with Query = CGAL::Segment_3; GeomTraits = CGAL::Epick; AABB_primitive = dolfin::MeshPrimitive >; CGAL::AABB_traits::Primitive = dolfin::MeshPrimitive >] /usr/include/CGAL/internal/AABB_tree/AABB_traversal_traits.h:172:5: required from ‘void CGAL::internal::AABB_tree::Listing_primitive_traits::intersection(const Query&, const Primitive&) [with AABBTraits = CGAL::AABB_traits > >; Query = CGAL::Segment_3; Output_iterator = std::insert_iterator >; CGAL::internal::AABB_tree::Listing_primitive_traits::Primitive = dolfin::MeshPrimitive > /usr/include/CGAL/internal/AABB_tree/AABB_node.h:166:5: required from ‘void CGAL::AABB_node::traversal(const Query&, Traversal_traits&, std::size_t) const [with Traversal_traits = CGAL::internal::AABB_tree::Listing_primitive_traits > >, CGAL::Segment_3, std::insert_iterator > >; Query = CGAL::Segment_3; AABBTraits = CGAL::AABB_traits > >; std::size_t = long unsigned int]’ /usr/include/CGAL/AABB_tree.h:208:5: required from ‘void CGAL::AABB_tree::traversal(const Query&, Traversal_traits&) const [with Query = CGAL::Segment_3; Traversal_traits = CGAL::internal::AABB_tree::Listing_primitive_traits > >, CGAL::Segment_3, std::insert_iterator > >; AABBTraits = CGAL::AABB_traits > >]’ /usr/include/CGAL/AABB_tree.h:448:3: required from ‘OutputIterator CGAL::AABB_tree::all_intersected_primitives(const Query&, OutputIterator) const [with Query = CGAL::Segment_3; OutputIterator = std::insert_iterator >; AABBTraits = CGAL::AABB_traits > >]’ /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperatorImplementation.h:161:15: required from ‘void dolfin::IntersectionOperatorImplementation_d::all_intersected_entities(const dolfin::MeshEntity&, std::vector&) const [with Primitive = dolfin::TetrahedronCell; Kernel = CG /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp:242:1: required from here /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/Segment_3_Tetrahedron_3_intersection.h:61:7: error: ‘dolfin_error’ was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive] In file included from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/log/dolfin_log.h: from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp:2 /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/log/log.h:86:8: note: ‘void dolfin::dolfin_error(std::string, std::string, std::string, ...)’ declared here, later in the translation unit [ 36%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionPlotData.cpp.o In file included from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/added_intersection_3.h:34:0, from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/cgal_includes from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperatorImplementati from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp:3 /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/Segment_3_Tetrahedron_3_intersection.h: In instantiation of ‘bool CGAL::internal::do_intersect(const typename K::Tetrahedron_3&, const typename K::Segment_3&, const K&) [with K = CGAL::Simple_cartesian >; typename K::Tetrahedron_3 = CGAL::Tetrahedron_3 > >; typename K::Segment_3 = CGAL::Segment_3 > >]’: /usr/include/CGAL/Kernel/function_objects.h:2044:48: required from ‘CGAL::CommonKernelFunctors::Do_intersect_3::result_type CGAL::CommonKernelFunctors::Do_intersect_3::operator()(const T1&, const T2&) const [with T1 = CGAL::Tetrahedron_3 > >; T2 = CGAL::Segment_3 > >; K = CGAL::Simple_cartesian >; CGAL::CommonKernelFunctors::Do_intersect_3::result_type = CGAL::Uncertain::result_type CGAL::Filtered_predicate::operator()(const A1&, const A2&) const [with A1 = CGAL::Tetrahedron_3; A2 = CGAL::Segment_3; EP = CGAL::CommonKernelFunctors::Do_intersect_3 >; AP = CGAL::CommonKernelFunctors::Do_intersect_3 > >; C2E = CGAL::Cartesian_converter, CGAL::Epick>, CGAL::Simple_cartesian, CGAL::NT_converter >; C2A = CGAL::Cartesian_converter, CGAL::Epick>, CGAL::Simple_cartesian >, CGAL::NT_converter > >; bool Protection = true; CGAL::Filtered_predicate::result_type = boo /usr/include/CGAL/AABB_traits.h:156:62: required from ‘bool CGAL::AABB_traits::Do_intersect::operator()(const Query&, const Primitive&) const [with Query = CGAL::Tetrahedron_3; GeomTraits = CGAL::Epick; AABB_primitive = dolfin::MeshPrimitive >; CGAL::AABB_traits::Primitive = dolfin::MeshPrimitive /usr/include/CGAL/internal/AABB_tree/AABB_traversal_traits.h:172:5: required from ‘void CGAL::internal::AABB_tree::Listing_primitive_traits::intersection(const Query&, const Primitive&) [with AABBTraits = CGAL::AABB_traits > >; Query = CGAL::Tetrahedron_3; Output_iterator = std::insert_iterator >; CGAL::internal::AABB_tree::Listing_primitive_traits::Primitive = dolfin::MeshPrimitive >]’ /usr/include/CGAL/internal/AABB_tree/AABB_node.h:166:5: required from ‘void CGAL::AABB_node::traversal(const Query&, Traversal_traits&, std::size_t) const [with Traversal_traits = CGAL::internal::AABB_tree::Listing_primitive_traits > >, CGAL::Tetrahedron_3, std::insert_iterator > >; Query = CGAL::Tetrahedron_3; AABBTraits = CGAL::AABB_traits > >; std::size_t = long unsigned int] /usr/include/CGAL/AABB_tree.h:208:5: required from ‘void CGAL::AABB_tree::traversal(const Query&, Traversal_traits&) const [with Query = CGAL::Tetrahedron_3; Traversal_traits = CGAL::internal::AABB_tree::Listing_primitive_traits > >, CGAL::Tetrahedron_3, std::insert_iterator > >; AABBTraits = CGAL::AABB_traits > >]’ /usr/include/CGAL/AABB_tree.h:448:3: required from ‘OutputIterator CGAL::AABB_tree::all_intersected_primitives(const Query&, OutputIterator) const [with Query = CGAL::Tetrahedron_3; OutputIterator = std::insert_iterator >; AABBTraits = CGAL::AABB_traits > >]’ /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperatorImplementation.h:163:15: required from ‘void dolfin::IntersectionOperatorImplementation_d::all_intersected_entities(const dolfin::MeshEntity&, std::vector&) const [with Primitive = dolfin::IntervalCell; Kernel = CGAL: /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp:242:1: required from here /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/Segment_3_Tetrahedron_3_intersection.h:48:7: error: ‘dolfin_error’ was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive] In file included from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/log/dolfin_log.h: from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp:2 /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/log/log.h:86:8: note: ‘void dolfin::dolfin_error(std::string, std::string, std::string, ...)’ declared here, later in the translation unit In file included from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/added_intersection_3.h:34:0, from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/cgal_includes.h:25, from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperatorImplementation.h:39, from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp:36: /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/Segment_3_Tetrahedron_3_intersection.h: In instantiation of ‘bool CGAL::internal::do_intersect(const typename K::Tetrahedron_3&, const typename K::Segment_3&, const K&) [with K = CGAL::Simple_cartesian; typename K::Tetrahedron_3 = CGAL::Tetrahedron_3 >; typename K::Segment_3 = CGAL::Segment_3 >]’: /usr/include/CGAL/Kernel/function_objects.h:2044:48: required from ‘CGAL::CommonKernelFunctors::Do_intersect_3::result_type CGAL::CommonKernelFunctors::Do_intersect_3::operator()(const T1&, const T2&) const [with T1 = CGAL::Tetrahedron_3 >; T2 = CGAL::Segment_3 >; K = CGAL::Simple_cartesian; CGAL::CommonKernelFunctors::Do_intersect_3::result_type = bool]’ /usr/include/CGAL/Filtered_predicate.h:217:31: required from ‘CGAL::Filtered_predicate::result_type CGAL::Filtered_predicate::operator()(const A1&, const A2&) const [with A1 = CGAL::Tetrahedron_3; A2 = CGAL::Segment_3; EP = CGAL::CommonKernelFunctors::Do_intersect_3 >; AP = CGAL::CommonKernelFunctors::Do_intersect_3 > >; C2E = CGAL::Cartesian_converter, CGAL::Epick>, CGAL::Simple_cartesian, CGAL::NT_converter >; C2A = CGAL::Cartesian_converter, CGAL::Epick>, CGAL::Simple_cartesian >, CGAL::NT_converter > >; bool Protection = true; CGAL::Filtered_predicate::result_type = bool]’ /usr/include/CGAL/AABB_traits.h:156:62: required from ‘bool CGAL::AABB_traits::Do_intersect::operator()(const Query&, const Primitive&) const [with Query = CGAL::Tetrahedron_3; GeomTraits = CGAL::Epick; AABB_primitive = dolfin::MeshPrimitive >; CGAL::AABB_traits::Primitive = dolfin::MeshPrimitive >]’ /usr/include/CGAL/internal/AABB_tree/AABB_traversal_traits.h:172:5: required from ‘void CGAL::internal::AABB_tree::Listing_primitive_traits::intersection(const Query&, const Primitive&) [with AABBTraits = CGAL::AABB_traits > >; Query = CGAL::Tetrahedron_3; Output_iterator = std::insert_iterator >; CGAL::internal::AABB_tree::Listing_primitive_traits::Primitive = dolfin::MeshPrimitive >]’ /usr/include/CGAL/internal/AABB_tree/AABB_node.h:166:5: required from ‘void CGAL::AABB_node::traversal(const Query&, Traversal_traits&, std::size_t) const [with Traversal_traits = CGAL::internal::AABB_tree::Listing_primitive_traits > >, CGAL::Tetrahedron_3, std::insert_iterator > >; Query = CGAL::Tetrahedron_3; AABBTraits = CGAL::AABB_traits > >; std::size_t = long unsigned int]’ /usr/include/CGAL/AABB_tree.h:208:5: required from ‘void CGAL::AABB_tree::traversal(const Query&, Traversal_traits&) const [with Query = CGAL::Tetrahedron_3; Traversal_traits = CGAL::internal::AABB_tree::Listing_primitive_traits > >, CGAL::Tetrahedron_3, std::insert_iterator > >; AABBTraits = CGAL::AABB_traits > >]’ /usr/include/CGAL/AABB_tree.h:448:3: required from ‘OutputIterator CGAL::AABB_tree::all_intersected_primitives(const Query&, OutputIterator) const [with Query = CGAL::Tetrahedron_3; OutputIterator = std::insert_iterator >; AABBTraits = CGAL::AABB_traits > >]’ /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperatorImplementation.h:163:15: required from ‘void dolfin::IntersectionOperatorImplementation_d::all_intersected_entities(const dolfin::MeshEntity&, std::vector&) const [with Primitive = dolfin::IntervalCell; Kernel = CGAL::Epick]’ /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp:242:1: required from here /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/Segment_3_Tetrahedron_3_intersection.h:48:7: error: ‘dolfin_error’ was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive] In file included from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/log/dolfin_log.h:6:0, from /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp:26: /tmp/yaourt-tmp-kkb110/aur-dolfin/src/dolfin-1.0.0/dolfin/log/log.h:86:8: note: ‘void dolfin::dolfin_error(std::string, std::string, std::string, ...)’ declared here, later in the translation unit [ 36%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFile.cpp.o make[2]: *** [dolfin/CMakeFiles/dolfin.dir/intersection/IntersectionOperator.cpp.o] Error 1 make[2]: *** Waiting for unfinished jobs.... make[1]: *** [dolfin/CMakeFiles/dolfin.dir/all] Error 2 make: *** [all] Error 2

DOLFIN

History of question #195885