-
arb (6.0.6-7) unstable; urgency=medium
* Team upload.
* d/control: revert to Debhelper compat 11
* Updated source lintian-overrides
* d/upstream/metadata: add bug and source respository information.
* d/copyright: be explicit that this package is not part of Debian
-- Michael R. Crusoe <email address hidden> Fri, 18 Aug 2023 13:17:20 +0200
-
arb (6.0.6-6) unstable; urgency=medium
* Team upload.
* d/po/sv: update Swedish debconf translations from Martin Bagge.
Closes: #918015
* d/po/pt_BR: update Brazilian Portuguese debconf templates translation from
Paulo Henrique de Lima Santana. Closes: #1026401
* d/po/tr: update turkish translation of debconf messages from
Atila KOÇ. Closes: #1038922
* d/control: switch Architecture to "any" as raxml is available
everywhere
* d/patches/110_narrowing.patch: Fix types for arm64, others
* d/rules: allow for parallel builds.
* Standards-Version: 4.6.2 (routine-update)
* debhelper-compat 13 (routine-update)
* Remove trailing whitespace in debian/changelog (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Trim trailing whitespace.
-- Michael R. Crusoe <email address hidden> Thu, 17 Aug 2023 19:59:54 +0200
-
arb (6.0.6-5) unstable; urgency=medium
* Team Upload.
[ Jelmer Vernooij ]
* Trim trailing whitespace.
* Use secure copyright file specification URI.
[ Andreas Tille ]
* Standards-Version: 4.2.1
* Remove trailing whitespace in debian/rules
* Do not parse d/changelog
* Fix description
Closes: #926017
* d/watch: (FIXME) Add location of new upstream releases as comment
[ Elmar Pruesse ]
* Fix stripping of static libs
[ Steffen Möller ]
* Update metadata with ref to conda
* Update metadata - updated bio.tools ref to lowercase
[ Nilesh Patra ]
* Add patch to fix FTBFS with new glibc, add flags to
use libtirpc-dev (Closes: #998237)
* Add B-D on libtirpc-dev
-- Nilesh Patra <email address hidden> Sat, 06 Nov 2021 02:25:36 +0530
-
arb (6.0.6-4) unstable; urgency=medium
* Fix symlink
Closes: #903921
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.5
-- Andreas Tille <email address hidden> Tue, 17 Jul 2018 15:47:02 +0200
-
arb (6.0.6-3) unstable; urgency=medium
* Add Indonesian debconf translation
Closes: #862913
* Standards-Version: 4.1.2
-- Andreas Tille <email address hidden> Tue, 19 Dec 2017 11:38:55 +0100
-
arb (6.0.6-2) unstable; urgency=medium
* Team upload
* Moved packaging to git
* d/control: transfig → fig2dev (Closes: #866151)
* do not create MAFFT symlinks (Closes: #857283)
* bump standards version
-- Fabian Klötzl <email address hidden> Tue, 12 Sep 2017 17:32:11 +0200
-
arb (6.0.6-1) unstable; urgency=medium
* New upstream version
* Update Swedish debconf translation (Thanks to Martin Bagge
<email address hidden>)
Closes: #769879
* Add Catalan debconf templates translation (Thanks to Innocent De Marchi
<email address hidden>)
Closes: #788004
* debhelper 10
* d/watch: version=4
* d/rules: hardening=+all (but no effect :-()
* Delete menu file
* Install arb_CHANGES.txt as upstream changelog
-- Andreas Tille <email address hidden> Wed, 07 Dec 2016 10:34:07 +0100
-
arb (6.0.3-2) unstable; urgency=medium
* Team upload.
* Fix building with GCC 6.
- Use correct return type in method definition.
- Allow for newer __cplusplus versions.
Closes: #834170
* Use secure Vcs-Browser.
* Do not depend on perl-modules.
* Bump Standards-Version.
-- Sascha Steinbiss <email address hidden> Sat, 17 Sep 2016 10:34:18 +0000
-
arb (6.0.3-1) unstable; urgency=medium
* New upstream version
* Applied all l10n patches - thanks a lot for the great l10n team
for pushing this
* Debconf templates and debian/control reviewed by the debian-l10n-
english team as part of the Smith review project. Closes: #761942
* [Debconf translation updates]
* Danish (Joe Hansen). Closes: #764869
* Dutch; (Frans Spiesschaert). Closes: #765088
* Russian (Yuri Kozlov). Closes: #765096
* Portuguese (Américo Monteiro). Closes: #761503
* Danish (Joe Hansen). Closes: #765865
* Czech (Michal Simunek). Closes: #766600
* Italian (Daniele Forsi). Closes: #766684
* German (Chris Leick). Closes: #766689
* French (Steve Petruzzello). Closes: #766728
* Catalan; (Innocent De Marchi). Closes: #766855
* Japanese (Hideki Yamane (Debian-JP)). Closes: #767247
* extra linker flag proposed by Tim Booth
* Lintian override to avoid false positives
* cme fix dpkg-control
* spelling+lintian fixes in d/copyright
-- Andreas Tille <email address hidden> Thu, 10 Dec 2015 12:26:14 +0100
-
arb (6.0.2-2) unstable; urgency=medium
[ Elmar Pruesse ]
* Add Portugese debconf translation (thanks to Américo Monteiro
<email address hidden> for the patch)
Closes: #761503
* Add Russian debconf translation (thanks to Yuri Kozlov
<email address hidden> for the patch)
Closes: #761616
* debian/arb_CHANGELOG.txt -> debian/changelog (fix lintian complaint)
[ Andreas Tille ]
* Skip compiler version check at all
Closes: #793187
-- Andreas Tille <email address hidden> Wed, 22 Jul 2015 22:49:16 +0200
-
arb (6.0.2-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version
Closes: #741890
* debian/upstream -> debian/upstream/metadata
* debian/control:
- Build-Depends: added libglib2.0-dev
- Depends: added mafft, mrbayes
* debian/rules
- Add explicite --remove-section=.comment option to manual strip call
* cme fix dpkg-control
* arb-common.dirs: Do not create unneeded lintian dir
* Add turkish debconf translation (thanks for the patch to Mert Dirik
<email address hidden>)
Closes: #757497
[ Elmar Pruesse ]
* patches removed:
- 10_config.makefiles.patch,
80_no_GL.patch
removed in favor of creating file from config.makefile.template via
sed in debian/control
- 20_Makefile_main.patch
merged upstream
- 21_Makefiles.patch
no longer needed
- 30_tmpfile_CVE-2008-5378.patch:
merged upstream
- 50_fix_gcc-4.8.patch:
merged upstream
- 40_add_libGLU.patch:
libGLU not needed for arb_ntree)
- 60_use_debian_packaged_raxml.patch:
merged upstream
- 70_hardening.patch
merged upstream
- 72_add_math_lib_to_linker.patch
does not appear to be needed
* patches added:
- 10_upstream_r12793__show_db_load_progress:
backported patch showing progress while ARB is loading a database
(needed as indicator/splash screen while ARB is launching)
- 20_upstream_r12794__socket_permissions:
backported security fix
- 30_upstream_r12814__desktop_keywords:
backported add keywords to desktop (fixes lintian warning)
- 40_upstream_r12815__lintian_spelling:
backported fix for lintian reported spelling errors
- 50_private_nameservers
change configuration to put nameservers into users home dirs
(avoids need for shared writeable directory)
- 60_use_debian_phyml
use phyml from debian package for both interfaces in ARB
* debian/rules:
- create config.makefile from override_dh_configure target
- use "make tarfile" in override_dh_install
- remove extra cleaning not needed for ARB 6
- use "dh_install --list-missing" to avoid missing files
- added override_dh_fixperms target
* debian/control:
- added libarb-dev package
- Depends: added phyml, xdg-utils
- Suggests: removed phyml
- fix lintian duplicate-short-description (new descriptions)
* debian/*.install:
- "unrolled" confusing globbing to select files
- pick files from debian/tmp
- moved all config files to /etc/arb
* debian/arb-common.templates: updated
* scripts:
- removed arb-add-pt-server
- launch-wrapper:
- only add demo.arb to newly created $ARBUSERDATA
- pass commandline arguments through bin/arb wrapper
- preinst: removing old PT server index files on upgrade from 5.5*
- postinst: set setgid on shared PT dir
* rewrote arb.1 manfile
* added file icon for ARB databases
* using upstream arb_tcp.dat
-- Elmar Pruesse <email address hidden> Tue, 02 Sep 2014 15:15:06 +0200
-
arb (5.5-5) unstable; urgency=low
* build-depend on libtiff-dev instead of libtiff4-dev (thanks for the
patch to Logan Rosen <email address hidden>)
Closes: #729769
* cme fix dpkg-control
* cme fix dpkg-copyright
* canonical Vcs fields
* debian/patches/hardening.patch: Propagate hardening options
-- Andreas Tille <email address hidden> Wed, 04 Dec 2013 09:24:14 +0100
-
arb (5.5-4) unstable; urgency=low
* Build-Depends: libglew-dev instead of libglew1.5-dev
Closes: #714327
-- Andreas Tille <email address hidden> Fri, 28 Jun 2013 09:42:35 +0200
-
arb (5.5-3) unstable; urgency=low
* debian/control:
- Restrict arb to architectures
amd64 i386 kfreebsd-i386 kfreebsd-amd64
because only there raxml is fullfilled. This makes sense because
arb will most probably used only on these architectures anyway.
Closes: #714268
- Remove Dependency from openjdk which is not needed any more
according to upstream
* debian/arb-common.README.debian: Explain restriction to certain
architectures
* debian/arb.README.debian: Updated about architecture restriction
and other things
-- Andreas Tille <email address hidden> Thu, 27 Jun 2013 14:52:57 +0200
-
arb (5.5-2) unstable; urgency=low
[ Tim Booth ]
* debian/rules: Make sure arb_edit4 will be really built and abort package
building process if not
[ Andreas Tille ]
* Rebuild against libmotiv-dev in main
Closes: #713061
* Add 4.6.3, 4.7.3 and 4.8.[0-3] to ALLOWED_GCC_VERSIONS
Closes: #713219
* debian/control:
- remove DM-Upload-Allowed
- Build-Depends: libglu1-mesa-dev
- add raxml to Depends and do not build third party copy any more
(debian/patches/60_use_debian_packaged_raxml.patch)
* debian/patches/*: DEP3 comments
* debian/patches/50_build_naligner.patch: Fix build issue that was
caused by some brocken $(CFLAGS)
* debian/rules: use xz compression
-- Andreas Tille <email address hidden> Mon, 24 Jun 2013 09:42:03 +0200
-
arb (5.5-1) unstable; urgency=low
* New upstream version (+adapted patches)
* Standards-Version: 3.9.4 (no changes needed)
* debian/po: Add Slovak po-debconf translation (Thanks to
Slavko <email address hidden> for the translation)
Closes: #686275
* debian/rules: Add '-lm' as suggested in patch by Konstantinos Margaritis
<email address hidden> to fix the build problem on armhf.
This together with new upstream closes: #692499
-- Andreas Tille <email address hidden> Tue, 11 Dec 2012 09:59:08 +0100
-
arb (5.3-4) unstable; urgency=low
* debian/upstream: Add citations
* debian/control:
- Build-Depends: libpng-dev instead of libpng12-dev
Closes: #662270
- Standards-Version: 3.9.3 (no changes needed)
* debian/po/nl.po: Add Dutch translation of debconf templates
Thanks for the translation to Jeroen Schot <email address hidden>
Closes: #654763
* debian/patches/30_Makefile_main:
- Enable gcc-4.7 as well
Closes: #682404
- Enable using hardening flags
* debian/patches/gcc-4.7.patch: Fix gcc-4.7 build issue
* debhelper 9 (control+compat)
* debian/rules:
- Fixed clean target
- propagate hardening flags
-- Andreas Tille <email address hidden> Thu, 26 Jul 2012 12:15:21 +0200
-
arb (5.3-3) unstable; urgency=low
* debian/control:
- Build-Depends: time
Strangely enough this is not needed in local pbnuilder/sbuild
environments but on autobuilders this seems to be a problem
according to comparing the build logs
- Build-Depends: libbio-perl-perl
Otherwise some not-critical checks will fail
* debian/arb.prerm: Care for removal of conffile link created in postinst
Closes: #656035
* debian/rules:
- clean up some manual handling of files and dirs which is not
needed any more with recent versions
- insert check which verifies that binary-indep target is really
builded and changed files and dirs are previousely created
Closes: #658691
-- Andreas Tille <email address hidden> Thu, 09 Feb 2012 13:44:22 +0100
-
arb (5.3-2) unstable; urgency=low
* debian/arb.README.Debian: Dropped molphy related notice
* debian/control:
- Remove Build-Depends: x11proto-print-dev
- Remove at least explicite Build-Depends: libxp-dev
Closes: #623638
* debian/{control,rules}: Remove quilt which is unneeded when
using source format 3.0 (quilt)
* debian/po/ca.po: Catalan translation (thanks to Innocent De Marchi
<email address hidden>)
Closes: #632206
-- Andreas Tille <email address hidden> Thu, 15 Dec 2011 17:00:46 +0100
-
arb (5.3-1) unstable; urgency=low
[ Nelson A. de Oliveira ]
* Fix FTBFS: replaced sablotron by xsltproc in debian/control
(Closes: #634999)
* Replaced arb dependency on the ssh metapackage by openssh-client only
[ Andreas Tille ]
* New upstream version (including updateing debian/patches/*)
This version doese not depend from molphy any more
* debian/control
- Do not depend from molphy which is removed from Debian any more
- Standards-Version: 3.9.2 (no changes needed)
- Fixed Vcs fields
* Debhelper 8 (control+compat)
* debian/copyright: several DEP5 fixes
-- Andreas Tille <email address hidden> Fri, 11 Nov 2011 11:46:22 +0100
-
arb (5.2-1) unstable; urgency=low
* New upstream version * Standards-Version: 3.9.1 (no changes needed) * New debconf translations - Vietnamese (thanks to Clytie Siddall <email address hidden>) Closes: #576020 - Danish (thanks to Joe Dalton <email address hidden>) Closes: #584283 - Brazilian Portuguese (thanks to Gustavo Jordan <email address hidden>) Closes: #596647 * Drop xview-clients Suggests in debian/control and replace any occurence of textedit (which is part of xview-clients) by editor via debian/patches/no_xview_dependency.patch Closes: 612534 * debian/patches/20_Makefiles: clean up some errors in clean target * debian/patches/20_config.makefiles: Really get the DEB_BUILD_ARCH_BITS applied * Build-Depends: time -- Andreas Tille <email address hidden> Wed, 09 Feb 2011 16:56:15 +0100
-
arb (5.1-1) unstable; urgency=low
[ Andreas Tille ]
* New upstream version
Closes: #522021
* debian/control:
- Package arb-doc in non-free/doc
- Standards-Version: 3.8.4 (Added README.source)
- Build-Depends: dpkg-dev (>= 1.15.4) to make use of
`dpkg-architecture -qDEB_BUILD_ARCH_BITS` in Makefile
- Build-Depends: xutils-dev
- arb Recommends: bioperl
- arb Suggests: phyml
- Build-Depends: openjdk-6-jdk instead of kaffe which might be subject
of removal from Debian in the near future
* Removed / changed patches which were applied upstream
- debian/patches/ARB_release200712_gcc4.3.1.patch removed
- debian/patches/20_replace_rxp_by_xmllint.patch removed
- debian/patches/tmpfile_CVE-2008-5378.patch removed applied part
* debian/{rules,*.install}: Cleanup regarding changes in new upstream version
* debian/arb.README.debian:
- Removed useless warning about prereleases
- Added hint about different phyml versions
* debian/patches/10_gcc_4.4.3.patch: compile with gcc-4.4.3
* debian/rules: Add ARBHOME variable explicitly to clean target
* Added Finish debconf translation (Thanks to Esko Arajärvi <email address hidden>)
Closes: #536516
* Added Galician debconf translation (Thanks to marce
<email address hidden>)
Closes: #537534
* Added Japanese debconf translation (Thankse to Hideki Yamane
<email address hidden>)
Closes: #554882
* Added: Spanish debconf translation (Thanks to Francisco Javier Cuadrado
<email address hidden>)
Closes: #573005
* Switch to source format 3.0
[ David Paleino ]
* Removed myself from Uploaders
* New watch file
-- Andreas Tille <email address hidden> Tue, 23 Mar 2010 14:37:30 +0100
-
arb (0.0.20071207.1-7) unstable; urgency=low
* Bumped debhelper to version 7
-> dh_clean -k -> dh_clean; dh_prep
* Standards-Version: 3.8.1 (no changes needed)
* Enhanced package description of arb-common and arb-doc
Closes: #517710
* Added Portuguese translation for debconf messages (thanks to
Traduz <email address hidden>)
Closes: #516958
* Added Depends: ${misc:Depends} to all packages
-- Andreas Tille <email address hidden> Fri, 20 Mar 2009 08:14:21 +0100
-
arb (0.0.20071207.1-6) unstable; urgency=low
* Save use of /tmp in arb-kill and addressing the other
potential tempfile symlink attacks reported in
CVE-2008-5378: possible symlink attacks
Closes: #508942
* Use xmllint instead of rxp to verify helpfile XML because
rxp is outdate, unmaintained and should be removed.
* Do not use command-with-path-in-maintainer-script in
postinst and config
* Added Russian debconf translation (Thanks to Yuri Kozlov)
Closes: #511376
-- Andreas Tille <email address hidden> Tue, 10 Feb 2009 23:32:41 +0100
-
arb (0.0.20071207.1-5) unstable; urgency=low
* Fix tempfile issues in upstream scripts
Closes: #496396
* Fix arb name server location in config file (Thanks to
Felipe Figueiredo <email address hidden>)
Closes: #495650
* arb-common.config: Make sure that config file will not fail
when NIS is used
-- Andreas Tille <email address hidden> Tue, 23 Sep 2008 13:32:05 +0200
