Change log for ugene package in Debian

ugene (50.0+dfsg-2) unstable; urgency=medium

  * Looking for plugins in their Debian install directory (Closes: #1071435)

 -- Pierre Gruet <email address hidden>  Wed, 05 Jun 2024 15:32:56 +0200

Available diffs

• diff from 50.0+dfsg-1 to 50.0+dfsg-2 (721 bytes)

ugene (50.0+dfsg-1) unstable; urgency=medium

  * New upstream version 50.0+dfsg
  * Refreshing patches
  * Raising Standards version to 4.7.0 (no change)
  * Adding myself as Uploader
  * Bumping years in d/copyright
  * Marking ugene-data as Multi-Arch: foreign
  * Providing a MetaInfo file for ugene
  * Removing now useless patch about missing header
  * Adding a patch for incomplete .desktop file entries
  * Adding a Lintian override for txt files in the -data package

 -- Pierre Gruet <email address hidden>  Wed, 24 Apr 2024 14:37:59 +0200

Available diffs

• diff from 49.1+dfsg-2build2 (in Ubuntu) to 50.0+dfsg-1 (1.1 MiB)

ugene (49.1+dfsg-2) unstable; urgency=medium

  * Source-only upload to unstable

 -- Pierre Gruet <email address hidden>  Tue, 12 Dec 2023 21:13:25 +0100

Available diffs

• diff from 40.1+dfsg-1ubuntu3 (in Ubuntu) to 49.1+dfsg-2 (7.2 MiB)

ugene (49.1+dfsg-1) unstable; urgency=medium

  * Team upload
  * New upstream version 49.1+dfsg
  * Refreshing patches
  * Shipping to main instead of non-free (Closes: #1018252):
    - Excluding files with non-free license (*.so and psipred)
    - Rewriting d/copyright
  * Updating install paths
  * Setting the runpaths so that private shared libraries can be found
  * Fixing spelling mistakes
  * Using python3 instead of python in shebangs
  * Fixing Lintian override syntax
  * Overriding Lintian warnings about spelling errors due to false positives

  [ Andreas Tille ]
  * Fix watch file
  * Standards-Version: 4.6.2 (routine-update)
  * Build-Depends: s/libprocps-dev/libproc2-dev/ (Closes: #1032688)

  [ Michael R. Crusoe ]
  * debian/patches/Fix-for-non-constant-SIGSTKSZ.patch: from Ubuntu,
    Closes: #1010358

 -- Pierre Gruet <email address hidden>  Tue, 12 Dec 2023 14:49:53 +0100

ugene (40.1+dfsg-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * New upstream version

  [ tony mancill ]
  * Refresh patches for new upstream version

  [ Andreas Tille ]
  * debhelper-compat 13 (routine-update)
  * Fix watchfile to detect new versions on github
  * Standards-Version: 4.6.0 (routine-update)
  * Remove trailing whitespace in debian/changelog (routine-update)
  * Do not try to install usr/share/applications which is not provided
    any more

 -- Andreas Tille <email address hidden>  Tue, 19 Oct 2021 12:55:46 +0200

ugene (34.0+dfsg-2) unstable; urgency=medium

  * Team upload.
  * Add patch for Qt 5.15 (Closes: #974075)

 -- tony mancill <email address hidden>  Fri, 04 Dec 2020 14:06:01 -0800

Available diffs

• diff from 34.0+dfsg-1 to 34.0+dfsg-2 (1.5 KiB)

ugene (34.0+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.5.0 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Use secure URI in Homepage field.
  * Set upstream metadata fields: Repository, Repository-Browse.

 -- Steffen Moeller <email address hidden>  Sat, 28 Mar 2020 17:25:10 +0100

Available diffs

• diff from 33.0+dfsg-1 to 34.0+dfsg-1 (613.7 KiB)

ugene (33.0+dfsg-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * New upstream version.
    Closes: #933334, #943514
  * Standards-Version: 4.4.1 (no changes required)
  * Adjusted patches
    - Upstream now builds against regular sqlite almost by default
    - changed default to system sqlite by a patch
    - Adjusted paths for dh_shlibdeps

  [ Andreas Tille ]
  * Remove psipred from upstream source - it is excluded from build anyway
  * d/watch: dversionmangle=auto (to accept +dfsg[0-9])
  * Add external plugins to Recommends as far as these are packaged
  * Drop Ivan Efremov <email address hidden> from Uploaders (thanks for your
    previous work on this package, Ivan)
  * Use UGENE_USE_BUNDLED_ZLIB=0
  * debhelper-compat 12
  * Remove trailing whitespace in debian/changelog
  * Remove trailing whitespace in debian/control
  * Remove trailing whitespace in debian/copyright
  * Set upstream metadata fields: Bug-Database, Bug-Submit.

 -- Andreas Tille <email address hidden>  Thu, 09 Jan 2020 15:11:09 +0100

ugene (1.31.1+dfsg-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * debian/upstream/metadata:
    - Added references to registries
    - yamllint cleanliness

  [ Andreas Tille ]
  * New upstream version
    Closes: #868885, #887305
  * Standards-Version: 4.3.0
  * Cleanup d/watch
  * More Files-Excluded
  * debhelper 12
  * Point Vcs fields to salsa.debian.org
  * Drop unused lintian-overrides

 -- Andreas Tille <email address hidden>  Thu, 31 Jan 2019 21:26:13 +0100

ugene (1.25.0+dfsg-1) unstable; urgency=medium

  * New upstream version
    Closes: #846557
  * debhelper 10
  * d/watch: version=4

 -- Andreas Tille <email address hidden>  Tue, 13 Dec 2016 14:15:10 +0100

Available diffs

• diff from 1.9.8+repack-0ubuntu4 (in Ubuntu) to 1.25.0+dfsg-1 (12.8 MiB)

ugene (1.24.2+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream release.
  * Fix building with GCC 6.
    - Force empty QMAKE_CXXFLAGS_ISYSTEM as suggested in
      https://github.com/ugeneunipro/ugene/issues/13.

 -- Sascha Steinbiss <email address hidden>  Sat, 17 Sep 2016 16:22:33 +0000

ugene (1.23.1+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream release.
  * Upload to allow rebuilding against libprocps6.
    Closes: #831374
  * Rename fixperms target to fix binary-arch-only FTBFS.
    Closes: #831326
  * Bump Standards-Version.
  * Use secure Vcs-Git.
  * Enable full hardening.

 -- Sascha Steinbiss <email address hidden>  Wed, 27 Jul 2016 21:57:26 +0000

ugene (1.21.0+dfsg-1) unstable; urgency=medium

  * New upstream version
    Closes: #810360
  * Use xz compression in d/watch

 -- Andreas Tille <email address hidden>  Mon, 14 Mar 2016 19:19:42 +0100

ugene (1.20.0+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Build-Depends: libprocps-dev (instead of libprocps4-dev)
    Closes: #810360
  * add repacksuffix to d/watch

 -- Andreas Tille <email address hidden>  Fri, 08 Jan 2016 19:35:14 +0100

ugene (1.19.0+dfsg-1) unstable; urgency=medium

  [Andreas Tille]
  * New upstream version
    Closes: #785035, #784534
  * Remove non necessary harcoded dependencies on transitional
    packages (Thanks to Lisandro Damián Nicanor Pérez Meyer for the
    patch)
    Closes: #784382
  * Moved packaging from SVN to Git
  * cme fix dpkg-control
  * override false lintian positives (package-contains-timestamped-gzip)
  * DEP5 fixes

  [Gert Wollny]
  * Update to build with QT5 (thanks to Gianfranco Costamagna for the initial 
    transition and pointing out some quirks)
  * update d/p/use_system_sqlite.patch

 -- Andreas Tille <email address hidden>  Sun, 13 Dec 2015 21:05:12 +0100

ugene (1.12.3+dfsg-1) unstable; urgency=low


  [ Andreas Tille ]
  * New upstream version
    Closes: #693655, #675298
  * debian/control
    - cme fix dpkg-control
    - Build-Depends: libxtst-dev
    - Moved to non-free (and reported the issue upstream as
       https://ugene.unipro.ru/tracker/browse/UGENE-1310
      Closes: #694044
  * debhelper 9 (control+compat)
  * debian/rules: Rewritten to use short dh
  [ Olivier Sallou ]
  * debian/rules, debian/patches: Add hardening flags for compilation

 -- Andreas Tille <email address hidden>  Mon, 18 Nov 2013 17:29:54 +0100

ugene (1.9.8+repack-1) experimental; urgency=low


  * First release to Debian
    - added README.Debian
    - increased policy version to 3.9.2
    - added URLs for version control system
  * Added debug package.

 -- Steffen Moeller <email address hidden>  Wed, 02 Nov 2011 13:29:07 +0100