Change log for beast2-mcmc package in Debian

beast2-mcmc (2.7.6+dfsg-1) unstable; urgency=medium

  * Fixing the clean target (Closes: #1043696, #1049745)

  [ Andreas Tille ]
  * New upstream version
  * Remove trailing whitespace in debian/rules (routine-update)

 -- Pierre Gruet <email address hidden>  Sat, 02 Dec 2023 23:33:10 +0100

Available diffs

• diff from 2.7.5+dfsg-1 to 2.7.6+dfsg-1 (44.2 KiB)

beast2-mcmc (2.7.5+dfsg-1) unstable; urgency=medium

  * New upstream version
  * d/watch: Do not report pre-releases

 -- Andreas Tille <email address hidden>  Mon, 03 Jul 2023 14:58:08 +0200

Available diffs

• diff from 2.7.3+dfsg-1 to 2.7.5+dfsg-1 (43.4 KiB)

beast2-mcmc (2.7.3+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Remove trailing whitespace in debian/copyright (routine-update)
  * Allow failures in piuparts in Salsa CI

 -- Andreas Tille <email address hidden>  Tue, 20 Dec 2022 21:05:50 +0100

Available diffs

• diff from 2.6.7+dfsg-1 to 2.7.3+dfsg-1 (2.1 MiB)
• diff from 2.7.2+dfsg-2 to 2.7.3+dfsg-1 (17.2 KiB)

beast2-mcmc (2.7.2+dfsg-2) unstable; urgency=medium

  * Deactivating some start-up actions:
    - The check for new versions of beast,
    - The attempt to install the jars elsewhere (Closes: #1025829)
  * Including the paths to shared libraries in java.library.path when launching
    beast2-mcmc, beauti2 and treeannotator2
  * Raising Standards version to 4.6.2 (no change)

 -- Pierre Gruet <email address hidden>  Sun, 18 Dec 2022 15:08:33 +0100

Available diffs

• diff from 2.7.2+dfsg-1 to 2.7.2+dfsg-2 (2.0 KiB)

beast2-mcmc (2.7.2+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)
  * Drop unneeded override_dh_auto_build

  [ Kieran Elmes ]
  * include /usr/lib/x86_64-linux-gnu in java.library.path

  [ Pierre Gruet ]
  * New upstream version 2.7.2+dfsg
  * Refreshing patches
  * Refreshing d/copyright
  * Packaging:
    - Including the beastfx component in the source, making a MUT package
    - Excluding JS files with very-long-lines
    - Stopping building the -doc package, its contents is not in the upstream
      tarball anymore
  * Updating dependencies and classpath
  * Cleaning the d/patches directory
  * Removing the dependencies of the built jars to alleviate them
  * debian/rules:
    - Invoking antlr4 during the build to generate source from grammar files
      using a Debian-packaged antlr4 version
    - Overriding the _auto_build and _auto_test rules to call the relevant ant
      tasks
  * Managing tests:
    - Adding an explicit conversion from Double to double to disambiguate
      an assertion in a test
    - Skipping tests using the unpackaged javafx
    - Skipping the test attempting to access the user home directory
    - Skipping the test needing GPU
  * Shipping a version.xml file for class loading, retrieving it from its
    install path
  * Updating autopkgtests:
    - Running run-unit-test with xvfb-run as a display would be needed
    - Running build tests as autopkgtests with junit5 instead of former junit4

 -- Pierre Gruet <email address hidden>  Sun, 13 Nov 2022 14:56:38 +0100

beast2-mcmc (2.6.7+dfsg-1) unstable; urgency=medium

  * New upstream version 2.6.7+dfsg
  * Reworking debian/copyright

 -- Pierre Gruet <email address hidden>  Fri, 22 Apr 2022 15:59:01 +0200

Available diffs

• diff from 2.6.6+dfsg-2 to 2.6.7+dfsg-1 (82.9 KiB)

beast2-mcmc (2.6.6+dfsg-2) unstable; urgency=medium

  * Lowering heap size on 32 bit architectures

 -- Pierre Gruet <email address hidden>  Mon, 23 Aug 2021 16:40:39 +0200

Available diffs

• diff from 2.6.3+dfsg-2 to 2.6.6+dfsg-2 (46.7 KiB)

beast2-mcmc (2.6.6+dfsg-1) unstable; urgency=medium

  * New upstream version 2.6.6+dfsg
  * Updating d/watch to match new Github release/tag page
  * Raising Standards version to 4.6.0 (no change)
  * Exporting LC_ALL in d/rules to care for unmappable characters in source
  * Refreshing patches

 -- Pierre Gruet <email address hidden>  Thu, 19 Aug 2021 17:11:55 +0200

beast2-mcmc (2.6.3+dfsg-2) unstable; urgency=medium

  * Adding missing runtime dependencies
  * Simplifying java invocations in files in debian/bin
  * Adding missing classpath entries and runtime dependencies
  * Adapting paths to a Debian install in the main class
  * Adding an autopkgtest by running examples
  * Adding build-time tests as autopkgtests
  * Marking Debian-specific patches as Forwarded: not-needed
  * Providing a doc-base file for registration of pdf docs
  * Installing files in folders named beast2-mcmc instead of beast-mcmc2
    or beast-mcmc
  * Marking doc and examples packages as Multi-Arch: foreign
  * Stop using commons-math.jar and documenting in d/README.source

 -- Pierre Gruet <email address hidden>  Sat, 03 Oct 2020 14:23:41 +0200

Available diffs

• diff from 2.6.0+dfsg-1 to 2.6.3+dfsg-2 (77.6 KiB)

beast2-mcmc (2.6.3+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Use secure URI in Homepage field.
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.

  [ Pierre Gruet ]
  * Removing jsign from the build as it is needed for Microsoft Windows
  * Deleting accents in MCMC.java as they caused build failures
  * Removing the import of useless and unpackaged org.fest.swing.security

 -- Andreas Tille <email address hidden>  Tue, 15 Sep 2020 11:38:30 +0200

beast2-mcmc (2.6.0+dfsg-1) unstable; urgency=medium

  * New upstream version
  * debhelper-compat 12
  * Standards-Version: 4.4.0

 -- Andreas Tille <email address hidden>  Wed, 31 Jul 2019 14:37:15 +0200

Available diffs

• diff from 2.5.1+dfsg-2 to 2.6.0+dfsg-1 (74.5 KiB)

beast2-mcmc (2.5.1+dfsg-2) unstable; urgency=medium

  * Avoid Mac only code which is not needed and fails due missing
    support in latest libjam-java
    Closes: #919728
  * debhelper 12
  * Standards-Version: 4.3.0

 -- Andreas Tille <email address hidden>  Sat, 26 Jan 2019 08:10:27 +0100

Available diffs

• diff from 2.5.1+dfsg-1 to 2.5.1+dfsg-2 (1.3 KiB)

beast2-mcmc (2.5.1+dfsg-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * d/u/metadata:
    - added RRIDs
    - yamllint cleanliness

  [ Andreas Tille ]
  * New upstream version
  * Point Vcs fields to salsa.debian.org
  * debhelper 11
  * Build-Depends: s/openjdk-8-jdk/default-jdk/
    Closes: #894359
  * Depends: s/openjdk-8-jre | java8-runtime/default-jre | java9-runtime/
  * d/rules: Add antlr4-runtime.jar to CLASS_PATH
  * Standards-Version: 4.2.1
  * d/rules: Do not parse d/changelog

  [ Jelmer Vernooij ]
  * Use secure copyright file specification URI.
  * Trim trailing whitespace.

 -- Andreas Tille <email address hidden>  Wed, 05 Dec 2018 07:57:09 +0100

Available diffs

• diff from 2.4.4+dfsg-1 to 2.5.1+dfsg-1 (214.7 KiB)

beast2-mcmc (2.4.4+dfsg-1) unstable; urgency=medium

  * New upstream version
  * debhelper 10
  * d/watch: version=4

 -- Andreas Tille <email address hidden>  Fri, 02 Dec 2016 11:20:11 +0100

Available diffs

• diff from 2.4.3+dfsg-1 to 2.4.4+dfsg-1 (18.6 KiB)

beast2-mcmc (2.4.3+dfsg-1) unstable; urgency=medium

  * New upstream version
  * d/watch: stop reporting pre-releases

 -- Andreas Tille <email address hidden>  Tue, 30 Aug 2016 08:32:05 +0200

Available diffs

• diff from 2.4.2+dfsg-1 to 2.4.3+dfsg-1 (33.6 KiB)

beast2-mcmc (2.4.2+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Fix beauti2 script
  * Respect proxy settings in beauti2 script

 -- Andreas Tille <email address hidden>  Mon, 18 Jul 2016 13:57:12 +0200

Available diffs

• diff from 2.4.1+dfsg-1 to 2.4.2+dfsg-1 (23.4 KiB)

beast2-mcmc (2.4.1+dfsg-1) unstable; urgency=medium

  * Initial release (Closes: #823396)

 -- Andreas Tille <email address hidden>  Wed, 04 May 2016 13:14:47 +0200