Change log for bcbio package in Debian
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bcbio (1.2.9-2) unstable; urgency=medium * Team upload. * Fix watch file * Remove trailing whitespace in debian/changelog (routine-update) -- Andreas Tille <email address hidden> Wed, 12 Oct 2022 09:38:21 +0200
Available diffs
- diff from 1.2.9-1 to 1.2.9-2 (572 bytes)
bcbio (1.2.9-1) unstable; urgency=medium * Team Upload [ Lance Lin ] * New upstream version - 1.2.9 * Standards-Version: 4.6.1 * Copyright: updated years to cover 2022 -- Lance Lin <email address hidden> Wed, 17 Aug 2022 20:16:42 +0700
bcbio (1.2.5-1) unstable; urgency=medium * New upstream version. -- Steffen Moeller <email address hidden> Tue, 26 Jan 2021 13:55:23 +0100
Available diffs
- diff from 1.2.4-2 to 1.2.5-1 (40.7 KiB)
bcbio (1.2.4-2) unstable; urgency=medium * Team upload. * Avoid calling Git - use Debian version to specify the code version Closes: #973804 -- Andreas Tille <email address hidden> Fri, 06 Nov 2020 11:16:33 +0100
Available diffs
- diff from 1.2.0-2 to 1.2.4-2 (295.0 KiB)
- diff from 1.2.4-1 to 1.2.4-2 (3.4 KiB)
bcbio (1.2.4-1) unstable; urgency=medium * New upstream version * debhelper-compat 13 (routine-update) -- Steffen Moeller <email address hidden> Sat, 26 Sep 2020 00:56:30 +0200
bcbio (1.2.0-2) unstable; urgency=medium * Team upload. * Drop tophat from Build-Depends Closes: #953642 * Add salsa-ci file (routine-update) -- Andreas Tille <email address hidden> Wed, 11 Mar 2020 18:26:32 +0100
Available diffs
- diff from 1.2.0-1 to 1.2.0-2 (630 bytes)
bcbio (1.2.0-1) unstable; urgency=medium * New upstream version * debhelper-compat 12 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Adjusted path of bcbio-doc for doc-base -- Steffen Moeller <email address hidden> Thu, 13 Feb 2020 18:30:04 +0100
Available diffs
- diff from 1.1.9-2 to 1.2.0-1 (22.0 KiB)
bcbio (1.1.9-2) unstable; urgency=medium * Team upload. * Drop tophat. -- Michael R. Crusoe <email address hidden> Fri, 14 Feb 2020 17:23:23 +0100
Available diffs
- diff from 1.1.9-1 to 1.1.9-2 (1.7 KiB)
bcbio (1.1.9-1) unstable; urgency=medium * New upstream version. * Updated d/watch -- Steffen Moeller <email address hidden> Wed, 11 Dec 2019 11:39:46 +0100
Available diffs
- diff from 1.1.8-1 to 1.1.9-1 (169.6 KiB)
bcbio (1.1.8-1) unstable; urgency=medium * New upstream version. -- Steffen Moeller <email address hidden> Tue, 26 Nov 2019 14:05:42 +0100
Available diffs
- diff from 1.1.7-1 to 1.1.8-1 (16.4 KiB)
bcbio (1.1.7-1) unstable; urgency=medium * New upstream version. * Added directions to contrib to -doc and python- packages -- Steffen Moeller <email address hidden> Sat, 19 Oct 2019 14:02:34 +0200
Available diffs
- diff from 1.1.5-1 to 1.1.7-1 (58.6 KiB)
bcbio (1.1.5-1) unstable; urgency=medium * New upstream version. * Better clean after build * Tests still fail. -- Steffen Moeller <email address hidden> Fri, 24 May 2019 18:42:30 +0200
Available diffs
- diff from 1.1.4-1 to 1.1.5-1 (15.5 KiB)
bcbio (1.1.4-1) unstable; urgency=medium * New upstream release. - Move to Python 3.6. A python2 environment in the install runs non python3 compatible programs. The codebase is still compatible with python 2.7 but will only get run and tested on python 3 for future releases. - RNA-seq: fix for race condition when creating the pizzly cache - RNA-seq: Add Salmon to multiqc report. - RNA-seq single-cell/DGE: Properly strip transcript versions from GENCODE GTFs. - RNA-seq: Faster and more flexible rRNA biotype lookup. - Move to R3.5.1, including updates to all CRAN and Bioconductor packages. - tumor-only germline prioritization: provide more useful germline filtering based on prioritization INFO tag (EPR) rather than filter field. - Install: do not require fabric for tool and data installs, making full codebase compatible with python 3. - variant: Filter out variants with missing ALT alleles output by GATK4. - GATK: enable specification of spark specific parameters with `gatk-spark` resources. - RNA-seq single-cell/DGE: added `demultiplexed` option. If set to True, treat the data as if it has already been demultiplexed into cells/wells. - Multiple orders of magnitude faster templating with thousands of input files. * Moved stringtie from suggested to recommended * Added dependency on xonsh for testing -- Steffen Moeller <email address hidden> Thu, 11 Apr 2019 12:56:58 +0200
Available diffs
- diff from 1.1.2-3 to 1.1.4-1 (111.3 KiB)
bcbio (1.1.3-1) unstable; urgency=medium * Team upload. * New upstream release. * bcbio-doc: mark as "Multi-Arch: foreign" * debian/patches/python3.patch: removed, applied upstream * debian/control: bcbio-doc: section is "doc" and add ${sphinxdoc:Built-Using} python3-bcbio: section is "python" * debian/patches/spelling: fix a few spelling errors * debian/patches/include_tests -- Michael R. Crusoe <email address hidden> Sun, 10 Feb 2019 00:42:06 -0800
bcbio (1.1.2-3) unstable; urgency=medium * Demoted python3-seqcluster to become a recommendation * Packaged documentation, which also contributed a man page -- Steffen Moeller <email address hidden> Wed, 23 Jan 2019 15:04:57 +0100
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