Change log for avogadrolibs package in Debian
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avogadrolibs (1.99.0-5) unstable; urgency=medium * debian patch fetch_PDB_error_check_PR1646.patch applies upstream PR1646 to prevent Fetch PDB segfaulting on unknown search terms. -- Drew Parsons <email address hidden> Wed, 06 Mar 2024 23:38:31 +0100
Available diffs
avogadrolibs (1.99.0-4) unstable; urgency=medium * debian patch fetch_PDB_PR1642.patch applies upstream PR#1642 to fix fetching molecules from the PDB database. -- Drew Parsons <email address hidden> Wed, 06 Mar 2024 11:33:28 +0100
Superseded in sid-release |
avogadrolibs (1.99.0-3.1) unstable; urgency=medium * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. Closes: #1061927 -- Steve Langasek <email address hidden> Wed, 28 Feb 2024 03:05:08 +0000
Available diffs
- diff from 1.99.0-3 to 1.99.0-3.1 (1.2 KiB)
Deleted in experimental-release (Reason: None provided.) |
avogadrolibs (1.99.0-3.1~exp1) experimental; urgency=medium * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. -- Michael Hudson-Doyle <email address hidden> Wed, 21 Feb 2024 23:37:52 +1300
avogadrolibs (1.99.0-3) unstable; urgency=medium * debian patch fix_startup_crash_PR1621.patch applies upstream PR#1621 to fix segfault when starting from the command line. -- Drew Parsons <email address hidden> Sun, 18 Feb 2024 10:11:51 +0100
Available diffs
- diff from 1.98.1-2 to 1.99.0-3 (6.4 MiB)
- diff from 1.99.0-2 to 1.99.0-3 (2.5 KiB)
avogadrolibs (1.99.0-2) unstable; urgency=medium * Build-Depends-Indep: graphviz for dot, used by doxygen. * debian/rules: use execute_after_dh_auto* to process docs and bin executable installation -- Drew Parsons <email address hidden> Mon, 12 Feb 2024 12:51:53 +0100
Available diffs
avogadrolibs (1.99.0-1) unstable; urgency=medium * New upstream release. - applies debian patches header_coreexport.patch and tests_include_eigen.patch - add fragments data as git subtree in debian/data/fragments from https://github.com/openchemistry/fragments (see avogadro/qtplugins/templatetool/CMakeLists.txt) * update debian/data git subtrees molecules and crystals - mark png files in debian/source/include-binaries * update debian patch qtplugins_insertfragment.patch to include fragments after adding set_fragments_PR1612.patch to apply upstream PR#1612 for fragments data dir. * update Build-Depends: pkg-config to pkgconf -- Drew Parsons <email address hidden> Mon, 12 Feb 2024 04:14:11 +0100
Deleted in experimental-release (Reason: None provided.) |
avogadrolibs (1.98.1-2.1~exp2) experimental; urgency=medium * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. * Fix uninstallable packages from the previous upload. -- Steve Langasek <email address hidden> Wed, 31 Jan 2024 09:00:00 +0000
Superseded in experimental-release |
avogadrolibs (1.98.1-2.1~exp1) experimental; urgency=medium * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. -- Steve Langasek <email address hidden> Tue, 30 Jan 2024 04:06:35 +0000
avogadrolibs (1.98.1-2) unstable; urgency=medium * v1.98 dropped docs/conf.py. Closes: #1043909. -- Drew Parsons <email address hidden> Mon, 27 Nov 2023 01:36:07 +0100
Available diffs
- diff from 1.97.0-4 to 1.98.1-2 (1.8 MiB)
avogadrolibs (1.97.0-4) unstable; urgency=low * Team upload. * Trim trailing whitespace. * Use secure URI in Homepage field. * Set field Upstream-Contact in debian/copyright. * Set upstream metadata fields: Bug-Submit. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Update standards version to 4.6.2, no changes needed. * Remove field Section on binary package avogadro-utils that duplicates source. -- Andrius Merkys <email address hidden> Mon, 13 Nov 2023 13:09:06 +0000
Available diffs
avogadrolibs (1.97.0-3) unstable; urgency=medium * deactivate VTK support as recommended by upstream (VTK support is not yet stable) * install static plugin libraries to the development package, not the binary package. Closes: #1022755. -- Drew Parsons <email address hidden> Tue, 08 Nov 2022 10:38:05 +0100
Available diffs
- diff from 1.97.0-2 to 1.97.0-3 (989 bytes)
avogadrolibs (1.97.0-2) unstable; urgency=medium * debian patch fix_mouse_scroll_PR1065.patch applies upstream PR#1065 to fix mouse button scrolling -- Drew Parsons <email address hidden> Fri, 29 Jul 2022 23:57:05 +0200
Available diffs
- diff from 1.97.0-1 to 1.97.0-2 (1.1 KiB)
avogadrolibs (1.97.0-1) unstable; urgency=medium * New upstream release. * activate VTK support - Build-Depends: libvtk9-qt-dev - debian patch manage_vtk.patch switches off plotxrd plugin (GenXrdPattern is not yet available for Debian) * update debian patch script_hashbang.patch adding scriptfileformats/formatScripts/zyx.py and antechamber.py * debian/tests: add OPENGL (rendering) tests (no need for VTK tests since qtopengl tests are not active) -- Drew Parsons <email address hidden> Thu, 28 Jul 2022 22:08:29 +0200
Available diffs
- diff from 1.96.0-2 to 1.97.0-1 (1.7 MiB)
avogadrolibs (1.96.0-2) unstable; urgency=medium * reinstate debian patch use_overlayaxes.patch to allow build with OpenGL on armel, armhf. The problem is Qt with OpenGL, not OpenGL in general, so add control flag USE_QT_OPENGL=OFF rather than USE_OPENGL=OFF, which would deactivate all OpenGL not just the problematic overlayaxes plugin. -- Drew Parsons <email address hidden> Fri, 03 Jun 2022 23:40:22 +0200
Available diffs
- diff from 1.95.1-9 to 1.96.0-2 (1.3 MiB)
- diff from 1.96.0-1 to 1.96.0-2 (1.1 KiB)
avogadrolibs (1.96.0-1) unstable; urgency=medium * New upstream release. - applies debian patches: fix_bond_centric_and_manipulator_tool.patch memory_crystal_PR876.patch nolayer_PR806.patch test_mostly_zero.patch use_overlayaxes.patch * Standards-Version: 4.6.1 -- Drew Parsons <email address hidden> Fri, 03 Jun 2022 19:51:51 +0200
Available diffs
- diff from 1.95.1-9 to 1.96.0-1 (1.3 MiB)
avogadrolibs (1.95.1-9) unstable; urgency=medium * add debian patches - memory_crystal_PR876.patch applies upstream PR876 to fix memory crash building crystal supercells. - doc_mathjax.patch configures docs to use local mathjax * fix python installation to use standard python3 location -- Drew Parsons <email address hidden> Fri, 29 Apr 2022 23:25:31 +0200
Available diffs
- diff from 1.95.1-8 to 1.95.1-9 (3.9 KiB)
avogadrolibs (1.95.1-8) unstable; urgency=medium * Team upload. * debian/patches/fix_bond_centric_and_manipulator_tool.patch: Add missing upstream commit c47d00c to patch, thanks to Aritz Erkiaga. -- Michael Banck <email address hidden> Sat, 26 Feb 2022 14:15:45 +0100
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- diff from 1.95.1-7 to 1.95.1-8 (959 bytes)
avogadrolibs (1.95.1-7) unstable; urgency=medium * Team upload. * debian/patches/fix_bond_centric_and_manipulator_tool.patch: New patch, fixes the bond centric and manipulation tools, taken from upstream commits 15fe8df and 64f62a4 from pull request #825 and thanks to Aritz Erkiaga. Closes: #1005006, #1006184. -- Michael Banck <email address hidden> Fri, 25 Feb 2022 08:07:31 +0100
Available diffs
- diff from 1.95.1-6 to 1.95.1-7 (1.3 KiB)
- diff from 1.95.1-8 to 1.95.1-7 (959 bytes)
- diff from 1.95.1-6build1 (in Ubuntu) to 1.95.1-7 (1.4 KiB)
avogadrolibs (1.95.1-6) unstable; urgency=medium * revert Build-Depends: python3:any | ... dh-sequence-python3 from 1.95.1-1. The lintian error was incorrect, see Bug#995981. Build with default python only since build uses cmake not pybuild. Closes: #998469. -- Drew Parsons <email address hidden> Thu, 25 Nov 2021 13:07:01 +0100
Available diffs
- diff from 1.94.0-6 to 1.95.1-6 (1.3 MiB)
- diff from 1.95.1-5build1 (in Ubuntu) to 1.95.1-6 (602 bytes)
avogadrolibs (1.95.1-5) unstable; urgency=medium * add molequeue support - adds quantum chemical input support (cp2k, gamess) - drop debian patch drop_cp2kinput.patch - Build-Depends: molequeue, libmolequeue-dev, libavogadro2-1 Recommends: molequeue. molequeue is used by libAvogadroMoleQueue.so.1 when available, avogadrolibs tests use libmolequeue-dev for molequeue cmake scripts - debian patch molequeue_system.patch builds against system molequeue instead of vendored molequeue client headers. * add qtgui tests in debian/tests - debian patch fix_test_qtgui.patch fixes linked libraries in tests/qtgui -- Drew Parsons <email address hidden> Fri, 15 Oct 2021 22:42:02 +0200
avogadrolibs (1.95.1-4) unstable; urgency=medium * debian patch test_mostly_zero.patch tests ">=0" within machine precision, i.e. ">=-EPS". Required for i386 to pass UnitCellTest.wrapAtomsToUnitCell, see upstream Issue #812. -- Drew Parsons <email address hidden> Sun, 10 Oct 2021 18:32:36 +0200
avogadrolibs (1.95.1-3) unstable; urgency=medium * debian patch use_overlayaxes.patch skips the overlayaxes plugin on armel,armhf. Qt/GL support is broken on armel,armhf, see Bug#798408 and the problem is triggered by the overlayaxes plugin. -- Drew Parsons <email address hidden> Sat, 09 Oct 2021 03:01:34 +0200
avogadrolibs (1.95.1-2) unstable; urgency=medium * debian patch nolayer_PR806.patch applies upstream PR#806 to fix handling molecules with no layers. Intended to fix spglib segfault (upstream Issue#752) -- Drew Parsons <email address hidden> Tue, 05 Oct 2021 11:53:07 +0200
avogadrolibs (1.95.1-1) unstable; urgency=medium * New upstream release. - applies debian patches fix_SMILES_PR661.patch fix_transparency_PR656.patch insert_crystals_PR658.patch insert_crystals_PR659.patch read_nonstandard_pdb_PR647.patch * Standards-Version: 4.6.0 * Build-Depends: python3:any | python3-all:any | python3-dev:any | python3-all-dev:any | dh-sequence-python3. For lintian warning missing-build-dependency-for-dh-addon * download libavogadro2-1 Depends to Recommends: python3:any -- Drew Parsons <email address hidden> Mon, 04 Oct 2021 16:14:46 +0200
Deleted in experimental-release (Reason: None provided.) |
avogadrolibs (1.94.0-6) experimental; urgency=medium * debian patches insert_crystals_PR658.patch and insert_crystals_PR659.patch apply upstream PR#658 and PR#659 to activate Insert Fragment for crystals. * debian patch fix_SMILES_PR661.patch fixes random failure to insert SMILES molecules. Note 'H' is not supported in the SMILES format. -- Drew Parsons <email address hidden> Fri, 09 Jul 2021 18:24:16 +0200
Available diffs
- diff from 1.93.1-3 to 1.94.0-6 (606.4 KiB)
Superseded in experimental-release |
avogadrolibs (1.94.0-5) experimental; urgency=medium * debian patch read_nonstandard_pdb_PR647.patch applies upstream PR#646 allowing nonstandard pdb files to be read. -- Drew Parsons <email address hidden> Fri, 09 Jul 2021 00:45:47 +0200
Available diffs
- diff from 1.94.0-3 to 1.94.0-5 (2.2 KiB)
Superseded in experimental-release |
avogadrolibs (1.94.0-4) experimental; urgency=medium * debian patch fix_transparency_PR656.patch applies upstream PR#656 to fix transparency of selections. * reinstate debian/tmp/html in debian/not-installed. It's installed by dh_installdocs not dh_install, dh_missing does not know about doc installations. -- Drew Parsons <email address hidden> Thu, 08 Jul 2021 20:59:47 +0200
Superseded in experimental-release |
avogadrolibs (1.94.0-3) experimental; urgency=medium * libavogadro-data: install molecules and crystals data directly from source in debian/data to enable arch-indep builds -- Drew Parsons <email address hidden> Tue, 06 Jul 2021 18:49:26 +0200
Superseded in experimental-release |
avogadrolibs (1.94.0-2) experimental; urgency=medium * libavogadro-dev Depends: libglvnd-dev Needed to provide libOpenGL.so (libopengl-dev) and other INTERFACE_LINK_LIBRARIES listed in cmake config scripts. -- Drew Parsons <email address hidden> Tue, 06 Jul 2021 17:47:53 +0200
Superseded in experimental-release |
avogadrolibs (1.94.0-1) experimental; urgency=medium * New upstream release. - Build-Depends: python3-skbuild, python3-wheel, libqt5svg5-dev - applies debian patches export_molecule_save_68fb007.patch, fix_spglib_include_path.patch, patch_version_1.93.1.patch * Build-Depends: libjs-mathjax. Use local copy of mathjax.js in docs. * libavogadro-data package provides molecules and crystals for the insertfragment plugin - provided in source as git subtrees in debian/data. - debian patch qtplugins_insertfragment.patch enables build access * libavogadro2-1 Recommends: python3-cclib (used by formatScripts/cclibScript.py) -- Drew Parsons <email address hidden> Tue, 29 Jun 2021 03:32:59 +0200
avogadrolibs (1.93.1-3) unstable; urgency=medium * debian patch export_molecule_save_68fb007.patch applies upstream commit 68fb007 (PR#517) to fix the Save dialog when exporting molecules (upstream issue #439). -- Drew Parsons <email address hidden> Wed, 14 Apr 2021 22:48:26 +0200
Available diffs
- diff from 1.93.1-2 to 1.93.1-3 (1.2 KiB)
avogadrolibs (1.93.1-2) unstable; urgency=medium * bring new upstream release into bullseye -- Drew Parsons <email address hidden> Sat, 27 Feb 2021 19:04:09 +0100
Available diffs
Deleted in experimental-release (Reason: None provided.) |
avogadrolibs (1.93.1-1) experimental; urgency=medium * New upstream release. * debian patch patch_version_1.93.1.patch fixes upstream CMakeLists.txt to register version as 1.93.1 not 1.93.0. -- Drew Parsons <email address hidden> Thu, 25 Feb 2021 18:23:37 +0100
Superseded in sid-release |
avogadrolibs (1.93.0+git20201104.926573b-1) unstable; urgency=medium * New upstream snapshot. * Standards-Version: 4.5.1 * use help2man to generate man pages for avobabel and qube (help2man -N -n "utility for Avogadro2" -S Avogadro2 --version-string='\0' avobabel > avobabel.1) -- Drew Parsons <email address hidden> Sun, 03 Jan 2021 01:33:43 +1100
Available diffs
Superseded in sid-release |
avogadrolibs (1.93.0+git20200509.e169315-1) unstable; urgency=medium * New upstream snapshot - fixes H atom handling during geometry optimization. - supports Python3 (drop debian patch build_python3.patch) * mark libavogadro-dev as Multi-Arch: same * add debian patches: - drop_cp2kinput.patch drops the cp2k input plugin, since it requires molequeue (upstream Issue#476) - script_hashbang.patch adds hashbang to executable plugin script libavogadro2-1 Depends: python3 to use it * libAvogadroCore*.a static libraries not longer built * debian/rules: include /usr/share/dpkg/architecture.mk * Build-Depends: qttools5-dev (for Qt linguist and its Find cmake file) * debhelper compatibility level 13 -- Drew Parsons <email address hidden> Wed, 03 Jun 2020 20:16:28 +0800
Available diffs
avogadrolibs (1.93.0-3) unstable; urgency=medium * debian/tests Depends: libgtest-dev -- Drew Parsons <email address hidden> Wed, 12 Feb 2020 10:54:55 +0800
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- diff from 1.92.1-5 to 1.93.0-3 (50.3 KiB)
- diff from 1.93.0-2 to 1.93.0-3 (401 bytes)
avogadrolibs (1.93.0-2) unstable; urgency=medium * add debian/tests for autopkgtest (currently tests C++ only) -- Drew Parsons <email address hidden> Tue, 11 Feb 2020 13:46:16 +0800
Available diffs
- diff from 1.93.0-1 to 1.93.0-2 (537 bytes)
avogadrolibs (1.93.0-1) unstable; urgency=medium * New upstream release. * Standards-Version: 4.5.0 -- Drew Parsons <email address hidden> Thu, 06 Feb 2020 11:59:39 +0800
Available diffs
avogadrolibs (1.92.1-5) unstable; urgency=medium * mark libavogadro2-1 as Multi-Arch: same, and libavogadro-doc as Multi-Arch: foreign * Depends: openbabel not libopenbabel-dev. Closes: #948769. -- Drew Parsons <email address hidden> Fri, 17 Jan 2020 18:41:21 +0800
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- diff from 1.92.1-4 to 1.92.1-5 (729 bytes)
avogadrolibs (1.92.1-4) unstable; urgency=medium * build dir uses DEB_HOST_GNU_TYPE not DEB_HOST_MULTIARCH -- Drew Parsons <email address hidden> Tue, 31 Dec 2019 10:31:32 +1100
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- diff from 1.92.1-3 to 1.92.1-4 (568 bytes)
avogadrolibs (1.92.1-3) unstable; urgency=medium * configure to build documentation only for arch-indep builds -- Drew Parsons <email address hidden> Tue, 31 Dec 2019 00:51:38 +1100
Available diffs
- diff from 1.92.1-2 to 1.92.1-3 (616 bytes)
avogadrolibs (1.92.1-2) unstable; urgency=medium * debian/copyright: explicitly declare licences of i18n .po translation files. -- Drew Parsons <email address hidden> Mon, 30 Dec 2019 11:48:13 +1100
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