Debian
augustus package

Change log for augustus package in Debian

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Published in sid-release 
augustus (3.5.0+dfsg-4) unstable; urgency=medium

  * Ensure multiple builds can be done in same directory.
    Done by ensuring the directory is cleaned correctly.
    Closes: #1043915

 -- Sascha Steinbiss <email address hidden>  Sat, 18 Nov 2023 08:21:25 +0100
Superseded in sid-release 
augustus (3.5.0+dfsg-3) unstable; urgency=medium

  * Add patch to fix building with GCC 13.
    Addresses: #1037821

 -- Sascha Steinbiss <email address hidden>  Sat, 17 Jun 2023 18:33:10 +0200

Available diffs

Published in bookworm-release
Superseded in sid-release 
augustus (3.5.0+dfsg-2) unstable; urgency=medium

  * Skip filterBam auxprogs test on s390x.

 -- Sascha Steinbiss <email address hidden>  Mon, 21 Nov 2022 00:11:53 +0100
Superseded in sid-release 
augustus (3.5.0+dfsg-1) unstable; urgency=medium

  * Team upload.
  * Fix watch file
  * Cleanup d/copyright from unused Files-Excluded
  * Standards-Version: 4.6.1 (routine-update)
  * Remove RUNPATH from binaries
  * lintian-overrides for false positives

 -- Andreas Tille <email address hidden>  Mon, 10 Oct 2022 09:16:46 +0200
Superseded in sid-release 
augustus (3.4.0+dfsg2-3) unstable; urgency=medium

  * Fix watchfile to work with recent GitHub link structure.

 -- Sascha Steinbiss <email address hidden>  Tue, 28 Sep 2021 22:14:24 +0200

Available diffs

Published in bullseye-release
Superseded in sid-release 
augustus (3.4.0+dfsg2-2) unstable; urgency=medium

  * Fix dversionmangle to allow for +dfsgX suffixes.
  * Run tests without --compare. This hopefully fixes FTBFS due to different
    results on different platforms, not matching the reference.

 -- Sascha Steinbiss <email address hidden>  Sun, 03 Jan 2021 16:10:48 +0100
Superseded in sid-release 
augustus (3.4.0+dfsg2-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * New upstream version
  * Standards-Version: 4.5.1 (routine-update)
  * Add salsa-ci file (routine-update)
  * Use secure URI in Homepage field.
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.

  [ Sascha Steinbiss ]
  * Remove obsolete directories from Files-Excluded.
  * Re-introduce tutorials in orig tarball.
  * Add Suggests for dependencies of the scripts bundled with AUGUSTUS.
  * Add/remove some content to be installed.
  * Extend doc-base files.
  * Add some new build-deps and remove old libbam-dev build-dep.
  * Remove Build-Using mechanics for libbam-dev.
  * Use patches prepared by upstream.
  * Adjust changelog location.

 -- Sascha Steinbiss <email address hidden>  Mon, 28 Dec 2020 22:33:43 +0100

Available diffs

Superseded in sid-release 
augustus (3.3.3+dfsg-4) unstable; urgency=medium

  * Drop conflicting build-dep on libcurl4-nss-dev.
    Closes: 971792
  * Use debhelper 13.
  * Add Rules-Requires-Root: no.

 -- Sascha Steinbiss <email address hidden>  Wed, 07 Oct 2020 13:20:31 +0200

Available diffs

Superseded in sid-release 
augustus (3.3.3+dfsg-3) unstable; urgency=medium

  * Use debhelper-compat.
  * Bump Standards-Version.
  * Add EDAM and citations (Thanks Matúš Kalaš).
  * Do yamllint on metadata (Thanks Steffen Moeller).

 -- Sascha Steinbiss <email address hidden>  Fri, 17 Apr 2020 11:31:53 +0200
Superseded in sid-release 
augustus (3.3.3+dfsg-2) unstable; urgency=medium

  * Use source package name for Built-Using entry.
    Closes: #940703

 -- Sascha Steinbiss <email address hidden>  Sun, 22 Sep 2019 21:40:24 +0200

Available diffs

Superseded in sid-release 
augustus (3.3.3+dfsg-1) unstable; urgency=medium

  [ Sascha Steinbiss ]
  * New upstream release.
  * Remove obsolete entry in doc-base.
  * Use debhelper 12.
  * Bump Standards-Version.
  * Fix interpreter paths in Perl scripts.

  [ Steffen Moeller ]
  * Add d/upstream/metadata reference to Conda.

 -- Sascha Steinbiss <email address hidden>  Wed, 18 Sep 2019 23:11:59 +0200
Published in buster-release
Superseded in sid-release 
augustus (3.3.2+dfsg-2) unstable; urgency=medium

  * Use dynamic Built-Using in d/control.
    Thanks to Andreas Beckmann for useful hints.
    Closes: #924359

 -- Sascha Steinbiss <email address hidden>  Fri, 15 Mar 2019 17:11:10 +0100

Available diffs

Superseded in buster-release
Superseded in sid-release 
augustus (3.3.2+dfsg-1) unstable; urgency=medium

  * New upstream release.
  * Exclude new training directory from tarball.
  * Adjust doc-base.
  * Use secure Format URL in d/copyright.
  * Add new build-deps for OpenSSL and libcurl.
  * Set AUGUSTUS_CONFIG_PATH at build time to enable tests.

 -- Sascha Steinbiss <email address hidden>  Sat, 06 Oct 2018 14:24:12 +0200

Available diffs

Superseded in buster-release
Superseded in sid-release 
augustus (3.3.1+dfsg-2) unstable; urgency=medium

  * Team upload.
  * d/watch: Source download is now on Github
  * Standards-Version: 4.2.1

 -- Andreas Tille <email address hidden>  Thu, 13 Sep 2018 15:48:26 +0200
Superseded in buster-release
Superseded in sid-release 
augustus (3.3.1+dfsg-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * debian/upstream/metadata: RRID -> SciCrunch

  [ Sascha Steinbiss ]
  * New upstream release.
  * Fix typo in manpage.
  * Remove obsolete Testsuite entry.
  * Bump Standards-Version.
  * Remove old patches.
  * Update VCS-* links.
  * Bump debhelper requirement to version 11.

 -- Sascha Steinbiss <email address hidden>  Sat, 12 May 2018 08:25:35 +0200
Superseded in buster-release
Superseded in sid-release 
augustus (3.3+dfsg-2) unstable; urgency=medium

  [ Steffen Moeller ]
  * Added registry entries for bio.tools and OMICtools.

  [ Sascha Steinbiss ]
  * Remove explicit dependencies to shared libraries.
    Closes: #869126
  * Make sure dynamic linking is used throughout the package.
    One exception is an executable still using the legacy samtools
    API, for which it links statically against the libbam.a provided
    by libbam-dev. Added a Built-Using entry for that.
    Thanks to Mattia Rizzolo for the hint.
  * Sanitize runtime dependencies.
  * Add missing auxtools to package.

 -- Sascha Steinbiss <email address hidden>  Fri, 28 Jul 2017 21:32:29 +0200
Superseded in sid-release 
augustus (3.3+dfsg-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * Added RRID (SCR_008417)

  [ Sascha Steinbiss ]
  * New upstream release.
  * Adjust excluded files as upstream chose to include some new binaries.
  * Bump Standards-Version.

 -- Sascha Steinbiss <email address hidden>  Mon, 17 Jul 2017 19:03:17 +0200
Superseded in buster-release
Published in stretch-release
Superseded in sid-release 
augustus (3.2.3+dfsg-1) unstable; urgency=medium

  * New upstream version.
  * Refresh and drop patches.
  * Adjust excluded files due to upstream source changes.
  * Drop unused overrides.
  * Use man pages provided by upstream.
  * Fix spelling errors.
  * Use debhelper 10.

 -- Sascha Steinbiss <email address hidden>  Sun, 11 Dec 2016 10:25:18 +0000

Available diffs

Superseded in stretch-release
Superseded in sid-release 
augustus (3.2.2+dfsg-2) unstable; urgency=medium

  * Update uploader email address.
  * Fix manpage option entry.
  * Avoid use of PATH_MAX. This enables building on Hurd.
  * Bump Standards-Version.

 -- Sascha Steinbiss <email address hidden>  Sun, 25 Sep 2016 13:00:07 +0000
Superseded in stretch-release
Superseded in sid-release 
augustus (3.2.2+dfsg-1) unstable; urgency=low

  * Initial release (Closes: #819355)

 -- Sascha Steinbiss <email address hidden>  Sat, 02 Apr 2016 20:13:40 +0000
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