Change log : ariba package : Debian

2.14.7+ds-2

Published in sid-release on 2024-02-01

ariba (2.14.7+ds-2) unstable; urgency=medium

  * Team upload.
  * Fix autopkgtest by replacing distutils
    Closes: #1061784
  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)

 -- Andreas Tille <email address hidden>  Thu, 01 Feb 2024 09:14:37 +0100

Available diffs

diff from 2.14.7+ds-1build1 (in Ubuntu) to 2.14.7+ds-2 (1.3 KiB)

2.14.7+ds-1

Superseded in sid-release on 2024-02-01

ariba (2.14.7+ds-1) unstable; urgency=medium

  * New upstream version 2.14.7+ds
  * port-to-pytest.patch: remove: applied upstream.
  * mpileup-1.16.patch: remove: applied upstream.
  * add-testdata.patch: refresh.
  * adjust-bowtie2-test.patch: remove: fixed upstream.
  * skip-cluster-test.patch: remove: fixed upstream.
  * disable-tests-with-internet-access.patch: forwarding not-needed.

 -- Étienne Mollier <email address hidden>  Sat, 14 Oct 2023 11:24:46 +0200

Available diffs

diff from 2.14.6+ds-5build1 (in Ubuntu) to 2.14.7+ds-1 (9.7 KiB)

2.14.6+ds-5

Published in bookworm-release on 2023-06-01

Superseded in sid-release on 2023-10-14

ariba (2.14.6+ds-5) unstable; urgency=medium

  * d/salsa-ci.yml: disable i386 run due to missing B-D.
  * d/control: bring back support for all python3 versions.
  * d/control: add myself to uploaders.
  * d/control: declare compliance to standards version 4.6.2.

 -- Étienne Mollier <email address hidden>  Sat, 07 Jan 2023 15:13:14 +0100

Available diffs

diff from 2.14.6+ds-4 to 2.14.6+ds-5 (921 bytes)
diff from 2.14.6+ds-4build1 (in Ubuntu) to 2.14.6+ds-5 (1006 bytes)

2.14.6+ds-4

Superseded in sid-release on 2023-01-08

ariba (2.14.6+ds-4) unstable; urgency=medium

  [ Andreas Tille ]
  * Team upload.
  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)
  * Add salsa-ci file (routine-update)

  [ Étienne Mollier ]
  * mpileup-1.16.patch: add; fix mpileup calls since htslib 1.16.
    (Closes: #1021675, #1022508)
  * skip-cluster-test.patch: add; skip due to mismatched output.
  * adjust-bowtie2-test.patch: skip some bowtie2 tests needing refresh.
  * d/control: don't built for python3.11 until pysam supports it.

 -- Étienne Mollier <email address hidden>  Wed, 14 Dec 2022 21:34:16 +0100

Available diffs

diff from 2.14.6+ds-3build1 (in Ubuntu) to 2.14.6+ds-4 (2.9 KiB)
diff from 2.14.6+ds-3build2 (in Ubuntu) to 2.14.6+ds-4 (3.0 KiB)

2.14.6+ds-3

Superseded in sid-release on 2022-12-15

ariba (2.14.6+ds-3) unstable; urgency=medium

  * Team Upload.
  * Switch from nosetest -> pytest

 -- Nilesh Patra <email address hidden>  Sun, 19 Dec 2021 00:26:03 +0530

Available diffs

diff from 2.14.6+ds-2 to 2.14.6+ds-3 (913 bytes)

2.14.6+ds-2

Superseded in sid-release on 2021-12-19

ariba (2.14.6+ds-2) unstable; urgency=medium

  * Fix d/watch to work with GitHub link structure.
  * Add Rules-Requires-Root.
  * Bump Standards-Version.
  * Update watchfile version.

 -- Sascha Steinbiss <email address hidden>  Tue, 28 Sep 2021 21:55:29 +0200

Available diffs

diff from 2.14.6+ds-1build1 (in Ubuntu) to 2.14.6+ds-2 (779 bytes)

2.14.6+ds-1

Published in bullseye-release on 2021-07-22

Superseded in sid-release on 2021-09-29

ariba (2.14.6+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Sun, 13 Sep 2020 18:34:46 +0200

Available diffs

diff from 2.14.5+ds-1 to 2.14.6+ds-1 (4.5 KiB)
diff from 2.14.5+ds-3build1 (in Ubuntu) to 2.14.6+ds-1 (1.9 KiB)

2.14.5+ds-3

Superseded in sid-release on 2020-09-13

ariba (2.14.5+ds-3) unstable; urgency=medium

  * Only build-depend on spades on amd64.

 -- Sascha Steinbiss <email address hidden>  Fri, 03 Jul 2020 19:55:45 +0200

Available diffs

diff from 2.14.5+ds-2 to 2.14.5+ds-3 (469 bytes)

2.14.5+ds-2

Superseded in sid-release on 2020-07-05

ariba (2.14.5+ds-2) unstable; urgency=medium

  [ Andreas Tille ]
  * Build-Depends: spades <!nocheck>
  * Suggests: spades

  [ Sascha Steinbiss ]
  * Add patch to fix test failures.
    Closes: #963332
  * Add patch to call SPAdes correctly.
  * Add upstream metadata.
  * Use debhelper 13.

 -- Sascha Steinbiss <email address hidden>  Tue, 30 Jun 2020 12:32:39 +0200

Available diffs

diff from 2.14.5+ds-1 to 2.14.5+ds-2 (3.1 KiB)

2.14.5+ds-1

Superseded in sid-release on 2020-07-05

ariba (2.14.5+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Fri, 22 May 2020 10:45:32 +0200

Available diffs

diff from 2.14.4+ds-2.1 to 2.14.5+ds-1 (4.1 KiB)

2.14.4+ds-2.1

Superseded in sid-release on 2020-05-22

ariba (2.14.4+ds-2.1) unstable; urgency=medium

  * Non-maintainer upload.
  * Build for all supported python3 versions to fix test failures in complex
    Python environments and ease python3 transitions (Closes: #951944)

 -- Scott Kitterman <email address hidden>  Tue, 24 Mar 2020 11:14:59 -0400

Available diffs

diff from 2.14.4+ds-2build1 (in Ubuntu) to 2.14.4+ds-2.1 (581 bytes)
diff from 2.14.4+ds-2build2 (in Ubuntu) to 2.14.4+ds-2.1 (626 bytes)

2.14.4+ds-2

Superseded in sid-release on 2020-03-24

ariba (2.14.4+ds-2) unstable; urgency=medium

  * Add B-D on dh-python to fix FTBFS.
  * Use debhelper-compat.
  * Bump Standards-Version.

 -- Sascha Steinbiss <email address hidden>  Fri, 24 Jan 2020 07:40:24 +0100

Available diffs

diff from 2.14.4+ds-1 to 2.14.4+ds-2 (1.2 KiB)

2.14.4+ds-1

Superseded in sid-release on 2020-01-24

ariba (2.14.4+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Thu, 26 Sep 2019 10:32:46 +0200

Available diffs

diff from 2.14.2+ds-1 to 2.14.4+ds-1 (6.7 KiB)

2.14.3+ds-1

Superseded in sid-release on 2019-09-26

ariba (2.14.3+ds-1) unstable; urgency=medium

  * New upstream release.
  * Bump Standards-Version.
  * Use debhelper 12.
  * Add patch headers.

 -- Sascha Steinbiss <email address hidden>  Mon, 09 Sep 2019 21:06:06 +0200

2.14.2+ds-1

Superseded in sid-release on 2019-09-10

ariba (2.14.2+ds-1) unstable; urgency=medium

  * New upstream release.
  * Make sure all testdata is installed before running after-build tests.
  * Disable tests attempting Internet access.

 -- Sascha Steinbiss <email address hidden>  Mon, 08 Jul 2019 18:06:19 +0200

Available diffs

diff from 2.13.3+ds-1 to 2.14.2+ds-1 (11.1 KiB)

2.13.3+ds-1

Published in buster-release on 2019-01-07

Superseded in sid-release on 2019-07-09

ariba (2.13.3+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Sat, 05 Jan 2019 10:34:41 +0000

Available diffs

diff from 2.13.2+ds-1 to 2.13.3+ds-1 (310.6 KiB)

2.13.2+ds-1

Superseded in buster-release on 2019-01-07

Superseded in sid-release on 2019-01-05

ariba (2.13.2+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Sun, 23 Dec 2018 14:40:20 +0000

Available diffs

diff from 2.13.1+ds-1 to 2.13.2+ds-1 (317.1 KiB)

2.13.1+ds-1

Superseded in buster-release on 2018-12-26

Superseded in sid-release on 2018-12-23

ariba (2.13.1+ds-1) unstable; urgency=medium

  * New upstream release.
  * Add new dependency to biopython.

 -- Sascha Steinbiss <email address hidden>  Wed, 21 Nov 2018 16:29:34 +0100

Available diffs

diff from 2.12.1+ds-2build1 (in Ubuntu) to 2.13.1+ds-1 (574.0 KiB)

2.12.1+ds-2

Superseded in buster-release on 2018-11-24

Superseded in sid-release on 2018-11-21

ariba (2.12.1+ds-2) unstable; urgency=medium

  * Team upload.
  * Build-Depends: python3-all-dev (instead of python3-all and python3-dev)
    Closes: #905616
  * Standards-Version: 4.2.0
  * cme fix dpkg-control

 -- Andreas Tille <email address hidden>  Thu, 16 Aug 2018 08:05:21 +0200

Available diffs

diff from 2.12.1+ds-1 to 2.12.1+ds-2 (840 bytes)

2.12.1+ds-1

Superseded in buster-release on 2018-08-18

Superseded in sid-release on 2018-08-16

ariba (2.12.1+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Wed, 20 Jun 2018 11:00:31 +0200

Available diffs

diff from 2.12.0+ds-1 to 2.12.1+ds-1 (1.2 KiB)

2.12.0+ds-1

Superseded in buster-release on 2018-06-22

Superseded in sid-release on 2018-06-20

ariba (2.12.0+ds-1) unstable; urgency=medium

  * New upstream release.
  * Remove obsolete python version hint in d/control.
  * Bump to debhelper 11.

 -- Sascha Steinbiss <email address hidden>  Tue, 15 May 2018 17:08:54 +0200

Available diffs

diff from 2.11.1+ds-3 to 2.12.0+ds-1 (5.5 KiB)

2.11.1+ds-3

Superseded in buster-release on 2018-05-18

Superseded in sid-release on 2018-05-16

ariba (2.11.1+ds-3) unstable; urgency=medium

  [ Steffen Möller ]
  * Update SciCrunch RRID in d/u/metadata.

  [ Sascha Steinbiss ]
  * Remove distutils again from runtime deps.
    Closes: #894903
  * Use Salsa Vcs-* URLs.
  * Bump Standards-Version.

 -- Sascha Steinbiss <email address hidden>  Fri, 13 Apr 2018 07:15:32 +0200

Available diffs

diff from 2.11.1+ds-2ubuntu1 (in Ubuntu) to 2.11.1+ds-3 (804 bytes)

2.11.1+ds-2

Superseded in buster-release on 2018-04-18

Superseded in sid-release on 2018-04-13

ariba (2.11.1+ds-2) unstable; urgency=medium

  * add distutils as runtime dependency

 -- Sascha Steinbiss <email address hidden>  Fri, 23 Mar 2018 07:23:32 +0100

2.11.1+ds-1

Superseded in buster-release on 2018-03-28

Superseded in sid-release on 2018-03-23

ariba (2.11.1+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Mon, 05 Mar 2018 00:29:24 +0100

2.11.0+ds-2

Superseded in buster-release on 2018-03-10

Superseded in sid-release on 2018-03-05

ariba (2.11.0+ds-2) unstable; urgency=medium

  * Fix watchfile to not report non-release tags (with '-X' suffix).

 -- Sascha Steinbiss <email address hidden>  Sat, 10 Feb 2018 12:26:13 +0100

Available diffs

diff from 2.11.0+ds-1 to 2.11.0+ds-2 (500 bytes)

2.11.0+ds-1

Superseded in buster-release on 2018-02-15

Superseded in sid-release on 2018-02-10

ariba (2.11.0+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Mon, 05 Feb 2018 09:47:29 +0100

Available diffs

diff from 2.10.3+ds-2 to 2.11.0+ds-1 (17.1 KiB)

2.10.3+ds-2

Superseded in buster-release on 2018-02-10

Superseded in sid-release on 2018-02-05

ariba (2.10.3+ds-2) unstable; urgency=medium

  * Add d/upstream/metadata.
    Thanks to Steffen Moeller for providing registry information.
  * Bump Standards-Version.
  * Require Python3 version in d/control.
  * Clean up test override target in d/rules.
  * Remove obsolete Testsuite entry in d/control.
  * Clean up unused patches from patch dir.
  * Use secure copyright format link in d/copyright.
  * Use debhelper 10.

 -- Sascha Steinbiss <email address hidden>  Tue, 30 Jan 2018 10:28:08 +0100

Available diffs

diff from 2.10.3+ds-1 to 2.10.3+ds-2 (3.0 KiB)

2.10.3+ds-1

Superseded in buster-release on 2018-02-05

Superseded in sid-release on 2018-01-31

ariba (2.10.3+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Tue, 28 Nov 2017 17:01:36 +0100

Available diffs

diff from 2.10.1+ds-1 to 2.10.3+ds-1 (1.4 KiB)

2.10.1+ds-1

Superseded in buster-release on 2017-12-04

Superseded in sid-release on 2019-06-04

ariba (2.10.1+ds-1) unstable; urgency=medium

  * New upstream release.
    Closes: #870362

 -- Sascha Steinbiss <email address hidden>  Tue, 15 Aug 2017 10:37:13 +0200

Available diffs

diff from 2.10.0+ds-1build1 (in Ubuntu) to 2.10.1+ds-1 (1.7 KiB)

2.10.0+ds-1

Superseded in buster-release on 2017-08-20

Superseded in sid-release on 2017-08-15

ariba (2.10.0+ds-1) unstable; urgency=medium

  * New upstream release.
  * Bump Standards-Version.

 -- Sascha Steinbiss <email address hidden>  Wed, 28 Jun 2017 22:59:02 +0200

Available diffs

diff from 2.9.4+ds-2build1 (in Ubuntu) to 2.10.0+ds-1 (5.0 KiB)

2.9.4+ds-2

Superseded in sid-release on 2017-06-29

ariba (2.9.4+ds-2) unstable; urgency=medium

  * Upload to unstable.

 -- Sascha Steinbiss <email address hidden>  Sun, 18 Jun 2017 10:30:10 +0000

2.9.4+ds-1

Deleted in experimental-release (Reason: None provided.)

ariba (2.9.4+ds-1) experimental; urgency=medium

  * New upstream version.

 -- Sascha Steinbiss <email address hidden>  Mon, 29 May 2017 16:58:51 +0200

2.9.3+ds-1

Superseded in experimental-release on 2017-05-29

ariba (2.9.3+ds-1) experimental; urgency=medium

  * New upstream version.

 -- Sascha Steinbiss <email address hidden>  Fri, 28 Apr 2017 16:54:06 +0200

2.9.2+ds-1

Superseded in experimental-release on 2017-04-28

ariba (2.9.2+ds-1) experimental; urgency=medium

  * New upstream version.

 -- Sascha Steinbiss <email address hidden>  Thu, 27 Apr 2017 10:01:07 +0200

2.7.2+ds-1

Superseded in experimental-release on 2017-04-27

ariba (2.7.2+ds-1) experimental; urgency=medium

  * Team upload.

  [ Sascha Steinbiss ]
  * New upstream release.
  * Raise version requirement for pymummer dep to 0.10.2.
  * Fix dependency version requirement for pysam.

  [ Andreas Tille ]
  * Adapt to fermi-lite changes that do not create conflict with libbwa

 -- Andreas Tille <email address hidden>  Fri, 10 Feb 2017 08:55:21 +0100

2.7.1+ds-1

Superseded in sid-release on 2017-06-19

ariba (2.7.1+ds-1) unstable; urgency=medium

  * New upstream release.
  * Raise version requirement for dendropy build-dep to 4.2.0.

 -- Sascha Steinbiss <email address hidden>  Fri, 27 Jan 2017 17:48:41 +0100

Available diffs

diff from 2.7.0+ds-1 to 2.7.1+ds-1 (1.4 KiB)

2.7.0+ds-1

Superseded in sid-release on 2017-01-29

ariba (2.7.0+ds-1) unstable; urgency=medium

  * New upstream release.
  * Add new dep on python3-bs4 (BeautifulSoup4).

 -- Sascha Steinbiss <email address hidden>  Tue, 17 Jan 2017 12:06:52 +0100

Available diffs

diff from 2.6.1+ds-1 to 2.7.0+ds-1 (5.8 KiB)

2.6.1+ds-1

Published in stretch-release on 2017-01-01

Superseded in sid-release on 2017-01-17

ariba (2.6.1+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Wed, 21 Dec 2016 19:14:35 +0000

Available diffs

diff from 2.6.0+ds-1 to 2.6.1+ds-1 (1.3 KiB)

2.6.0+ds-1

Superseded in sid-release on 2016-12-22

ariba (2.6.0+ds-1) unstable; urgency=medium

  * New upstream release.
  * Adjust dependency versions in d/control.

 -- Sascha Steinbiss <email address hidden>  Wed, 21 Dec 2016 10:45:02 +0000

Available diffs

diff from 2.5.1+ds-1 to 2.6.0+ds-1 (77.4 KiB)

2.5.1+ds-1

Superseded in stretch-release on 2017-01-01

Superseded in sid-release on 2016-12-22

ariba (2.5.1+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Mon, 05 Dec 2016 09:58:45 +0000

Available diffs

diff from 2.5.0+ds-1 to 2.5.1+ds-1 (2.7 KiB)

2.5.0+ds-1

Superseded in stretch-release on 2016-12-16

Superseded in sid-release on 2016-12-05

ariba (2.5.0+ds-1) unstable; urgency=medium

  * New upstream release.
  * Adjust dependency versions in d/control.

 -- Sascha Steinbiss <email address hidden>  Fri, 18 Nov 2016 19:57:10 +0000

Available diffs

diff from 2.4.0+ds-1 to 2.5.0+ds-1 (3.7 KiB)

2.4.0+ds-1

Superseded in stretch-release on 2016-11-25

Superseded in sid-release on 2016-11-20

ariba (2.4.0+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Wed, 02 Nov 2016 10:51:12 +0100

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diff from 2.3.0+ds-1 to 2.4.0+ds-1 (114.4 KiB)

2.3.0+ds-1

Superseded in stretch-release on 2016-11-08

Superseded in sid-release on 2016-11-02

ariba (2.3.0+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Wed, 12 Oct 2016 16:00:09 +0000

Available diffs

diff from 2.2.5+ds-1 to 2.3.0+ds-1 (48.1 KiB)

2.2.5+ds-1

Superseded in stretch-release on 2016-10-18

Superseded in sid-release on 2016-10-13

ariba (2.2.5+ds-1) unstable; urgency=medium

  * New upstream release.
  * Drop dependency on samtools and bcftools.

 -- Sascha Steinbiss <email address hidden>  Wed, 31 Aug 2016 13:24:41 +0000

Available diffs

diff from 2.2.1+ds-1 to 2.2.5+ds-1 (56.0 KiB)

2.2.4+ds-1

Superseded in stretch-release on 2016-09-06

Superseded in sid-release on 2016-09-01

ariba (2.2.4+ds-1) unstable; urgency=medium

  * New upstream release.
  * Adjust pymummer dependency to min version 0.8.1.

 -- Sascha Steinbiss <email address hidden>  Wed, 24 Aug 2016 08:14:05 +0000

2.2.3+ds-1

Superseded in sid-release on 2016-08-25

ariba (2.2.3+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Tue, 23 Aug 2016 12:00:19 +0000

2.2.2+ds-1

Superseded in sid-release on 2016-08-24

ariba (2.2.2+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Mon, 22 Aug 2016 17:10:32 +0000

2.2.1+ds-1

Superseded in sid-release on 2016-08-22

ariba (2.2.1+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Thu, 18 Aug 2016 20:32:37 +0000

Available diffs

diff from 2.2.0+ds-1 to 2.2.1+ds-1 (1.7 KiB)

2.2.0+ds-1

Superseded in sid-release on 2016-08-19

ariba (2.2.0+ds-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <email address hidden>  Thu, 18 Aug 2016 15:03:08 +0000

Available diffs

diff from 2.1.0+ds-1 to 2.2.0+ds-1 (215.1 KiB)

2.1.0+ds-1

Superseded in stretch-release on 2016-08-30

Superseded in sid-release on 2016-08-18

ariba (2.1.0+ds-1) unstable; urgency=medium

  * New upstream release.
  * Adjust dependencies to new upstream requirements.
  * Drop patches applied by upstream or made obsolete.
  * Add bindnow hardening.
  * Simplify manpage building.
  * Change architecture to any as ariba now builds native
    Python extensions.
  * Add shlibs:Depends for ariba binary package.
  * d/watch: use zip file from GitHub due to long filenames
    in tarball

 -- Sascha Steinbiss <email address hidden>  Thu, 04 Aug 2016 10:19:46 +0000

Available diffs

diff from 1.0.1-1 to 2.1.0+ds-1 (216.9 KiB)

1.0.1-1

Superseded in stretch-release on 2016-08-10

Superseded in sid-release on 2016-08-05

ariba (1.0.1-1) unstable; urgency=medium

  * New upstream release.
  * Update uploader email.

 -- Sascha Steinbiss <email address hidden>  Tue, 28 Jun 2016 14:24:04 +0000

Available diffs

diff from 1.0.0-1 to 1.0.1-1 (3.1 KiB)

1.0.0-1

Superseded in stretch-release on 2016-07-04

Superseded in sid-release on 2016-06-29

ariba (1.0.0-1) unstable; urgency=low

  * Initial packaging (Closes: #825529)

 -- Sascha Steinbiss <email address hidden>  Fri, 27 May 2016 10:45:11 +0000

Debianariba package

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Debian
ariba package