--- bioruby-1.4.0.orig/debian/br_biogetseq.rb.sgml
+++ bioruby-1.4.0/debian/br_biogetseq.rb.sgml
@@ -0,0 +1,144 @@
+ manpage.1'. You may view
+ the manual page with: `docbook-to-man manpage.sgml | nroff -man |
+ less'. A typical entry in a Makefile or Makefile.am is:
+
+manpage.1: manpage.sgml
+ docbook-to-man $< > $@
+
+
+ The docbook-to-man binary is found in the docbook-to-man package.
+ Please remember that if you create the nroff version in one of the
+ debian/rules file targets (such as build), you will need to include
+ docbook-to-man in your Build-Depends control field.
+
+ -->
+
+
+ David">
+ Nusinow">
+
+ January 31, 2005">
+
+ 1">
+ dnusinow@debian.org">
+
+ BIORUBY">
+
+
+ Debian">
+ GNU">
+ GPL">
+]>
+
+
+
+
+ &dhemail;
+
+
+ &dhfirstname;
+ &dhsurname;
+
+
+ 2005
+ &dhusername;
+
+ &dhdate;
+
+
+ &dhucpackage;
+
+ &dhsection;
+
+
+ &dhpackage;
+
+ ODBA Sequence Retrieval
+
+
+
+ &dhpackage;
+
+
+
+
+
+
+
+
+ DESCRIPTION
+
+ This manual page documents briefly the
+ &dhpackage;.
+
+ &dhpackage; is an ODBC sequence retrieval program.
+ Simply point it at the database of interest, with an optional namespace,
+ and give it the sequence id that you want, and it will retrieve it.
+
+
+
+ OPTIONS
+
+
+
+
+
+
+ Specify the database to query (required).
+
+
+
+
+
+
+ Specify the namespace to query.
+
+
+
+
+
+
+ Specify the ID of the sequence to be retrieved.
+
+
+
+
+
+ AUTHOR
+
+ This manual page was written by &dhusername; &dhemail; for
+ the &debian; system (but may be used by others). Permission is
+ granted to copy, distribute and/or modify this document under
+ the terms of the &gnu; General Public License, Version 2 any
+ later version published by the Free Software Foundation.
+
+
+ On Debian systems, the complete text of the GNU General Public
+ License can be found in /usr/share/common-licenses/GPL.
+
+
+
+
+
+
+
+
--- bioruby-1.4.0.orig/debian/br_pmfetch.rb.sgml
+++ bioruby-1.4.0/debian/br_pmfetch.rb.sgml
@@ -0,0 +1,288 @@
+ manpage.1'. You may view
+ the manual page with: `docbook-to-man manpage.sgml | nroff -man |
+ less'. A typical entry in a Makefile or Makefile.am is:
+
+manpage.1: manpage.sgml
+ docbook-to-man $< > $@
+
+
+ The docbook-to-man binary is found in the docbook-to-man package.
+ Please remember that if you create the nroff version in one of the
+ debian/rules file targets (such as build), you will need to include
+ docbook-to-man in your Build-Depends control field.
+
+ -->
+
+
+ David">
+ Nusinow">
+
+ January 31, 2005">
+
+ 1">
+ dnusinow@debian.org">
+
+ BIORUBY">
+
+
+ Debian">
+ GNU">
+ GPL">
+]>
+
+
+
+
+ &dhemail;
+
+
+ &dhfirstname;
+ &dhsurname;
+
+
+ 2005
+ &dhusername;
+
+ &dhdate;
+
+
+ &dhucpackage;
+
+ &dhsection;
+
+
+ &dhpackage;
+
+ PubMed Client
+
+
+
+ &dhpackage;
+
+ "query string"
+
+
+ &dhpackage;
+
+
+
+
+
+ DESCRIPTION
+
+ This manual page documents briefly the
+ &dhpackage;.
+
+ &dhpackage; is a command line program to query
+ PubMed. It can take a variety of options (documented below) to restrict
+ your search query, which is specified by the query string.
+
+
+
+ OPTIONS
+
+
+
+
+
+
+
+ Query string for PubMed search.
+
+
+
+
+
+
+
+ Title of the article to search.
+
+
+
+
+
+
+
+ Journal title to search.
+
+
+
+
+
+
+
+ Journal volume to search.
+
+
+
+
+
+
+
+ Journal issue to search.
+
+
+
+
+
+
+
+ First page number of the article to search.
+
+
+
+
+
+
+
+ Author name to search.
+
+
+
+
+
+
+
+ MeSH term to search.
+
+
+
+
+
+
+
+ Summary output format. Options are endnote, medline, bibitem,
+ bibtex, report, abstract nature, science, genome_res, genome_biol,
+ nar, current, trends, cell.
+
+
+
+
+
+
+
+ Output only a list of PudMed IDs.
+
+
+
+
+
+
+
+ Number of articles to retrieve at the maximum.
+
+
+
+
+
+
+
+ Starting number of articles to retrieve.
+
+
+
+
+
+
+
+ Sort method for the summary output. Options are author,
+ journal, pub+date.
+
+
+
+
+
+
+
+ Search articles published within recent # of days.
+
+
+
+
+
+
+
+ Search articles published after the date YYYY/MM/DD.
+
+
+
+
+
+
+
+ Search articles published before the date YYYY/MM/DD.
+
+
+
+
+
+
+
+ Output help and then exit.
+
+
+
+
+
+
+
+ Output example usages and then exit.
+
+
+
+
+
+
+
+ Output version number and then exit.
+
+
+
+
+
+ SEE ALSO
+
+ The following pages have information on the PubMed search
+ options: http://www.ncbi.nlm.nih.gov/entrez/query/static/help/pmhelp.html
+ http://www.ncbi.nlm.nih.gov/entrez/query/static/esearch_help.html
+
+
+
+ AUTHOR
+
+ This manual page was written by &dhusername; &dhemail; for
+ the &debian; system (but may be used by others). Permission is
+ granted to copy, distribute and/or modify this document under
+ the terms of the &gnu; General Public License, Version 2 any
+ later version published by the Free Software Foundation.
+
+
+ On Debian systems, the complete text of the GNU General Public
+ License can be found in /usr/share/common-licenses/GPL.
+
+
+
+
+
+
+
+
--- bioruby-1.4.0.orig/debian/docs
+++ bioruby-1.4.0/debian/docs
@@ -0,0 +1 @@
+README*
--- bioruby-1.4.0.orig/debian/copyright
+++ bioruby-1.4.0/debian/copyright
@@ -0,0 +1,75 @@
+This package was debianized by David Nusinow on
+Mon, 31 Jan 2005 11:11:55 -0500.
+
+It was downloaded from http://www.bioruby.org
+
+Copyright: KATAYAMA Toshiaki
+
+Upstream Authors: * KATAYAMA Toshiaki , project leader
+ * Yoshinori K. Okuji
+ * Mitsuteru C. Nakao
+ * KAWASHIMA Shuichi
+ * GOTO Naohisa
+
+License:
+
+This library is distributed under the same terms as ruby. As such, it may
+be distributed either under the terms of the GPL or the conditions below:
+
+ 1. You may make and give away verbatim copies of the source form of the
+ software without restriction, provided that you duplicate all of the
+ original copyright notices and associated disclaimers.
+
+ 2. You may modify your copy of the software in any way, provided that
+ you do at least ONE of the following:
+
+ a) place your modifications in the Public Domain or otherwise
+ make them Freely Available, such as by posting said
+ modifications to Usenet or an equivalent medium, or by allowing
+ the author to include your modifications in the software.
+
+ b) use the modified software only within your corporation or
+ organization.
+
+ c) rename any non-standard executables so the names do not conflict
+ with standard executables, which must also be provided.
+
+ d) make other distribution arrangements with the author.
+
+ 3. You may distribute the software in object code or executable
+ form, provided that you do at least ONE of the following:
+
+ a) distribute the executables and library files of the software,
+ together with instructions (in the manual page or equivalent)
+ on where to get the original distribution.
+
+ b) accompany the distribution with the machine-readable source of
+ the software.
+
+ c) give non-standard executables non-standard names, with
+ instructions on where to get the original software distribution.
+
+ d) make other distribution arrangements with the author.
+
+ 4. You may modify and include the part of the software into any other
+ software (possibly commercial). But some files in the distribution
+ are not written by the author, so that they are not under this terms.
+ They are gc.c(partly), utils.c(partly), regex.[ch], fnmatch.[ch],
+ glob.c, st.[ch] and some files under the ./missing directory. See
+ each file for the copying condition.
+
+ 5. The scripts and library files supplied as input to or produced as
+ output from the software do not automatically fall under the
+ copyright of the software, but belong to whomever generated them,
+ and may be sold commercially, and may be aggregated with this
+ software.
+
+ 6. THIS SOFTWARE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR
+ IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED
+ WARRANTIES OF MERCHANTIBILITY AND FITNESS FOR A PARTICULAR
+ PURPOSE.
+
+--
+On Debian GNU/Linux systems, the complete text of the GNU General
+Public License can be found in `/usr/share/common-licenses/GPL'.
+
--- bioruby-1.4.0.orig/debian/compat
+++ bioruby-1.4.0/debian/compat
@@ -0,0 +1 @@
+7
--- bioruby-1.4.0.orig/debian/br_bioflat.rb.sgml
+++ bioruby-1.4.0/debian/br_bioflat.rb.sgml
@@ -0,0 +1,256 @@
+ manpage.1'. You may view
+ the manual page with: `docbook-to-man manpage.sgml | nroff -man |
+ less'. A typical entry in a Makefile or Makefile.am is:
+
+manpage.1: manpage.sgml
+ docbook-to-man $< > $@
+
+
+ The docbook-to-man binary is found in the docbook-to-man package.
+ Please remember that if you create the nroff version in one of the
+ debian/rules file targets (such as build), you will need to include
+ docbook-to-man in your Build-Depends control field.
+
+ -->
+
+
+ David">
+ Nusinow">
+
+ January 31, 2005">
+
+ 1">
+ dnusinow@debian.org">
+
+ BIORUBY">
+
+
+ Debian">
+ GNU">
+ GPL">
+]>
+
+
+
+
+ &dhemail;
+
+
+ &dhfirstname;
+ &dhsurname;
+
+
+ 2005
+ &dhusername;
+
+ &dhdate;
+
+
+ &dhucpackage;
+
+ &dhsection;
+
+
+ &dhpackage;
+
+ OBDA flat file indexer
+
+
+ Search:
+
+ &dhpackage;
+
+
+
+
+ &dhpackage;
+
+ --location DIR
+ --dbname DBNAME
+
+ KEYWORDS
+
+
+ Create index:
+
+ &dhpackage;
+
+
+
+
+
+
+
+
+ Update index:
+
+ &dhpackage;
+
+
+
+
+
+
+
+ Show namespaces:
+
+ &dhpackage;
+
+
+
+
+
+
+ &dhpackage;
+
+
+
+
+ &dhpackage;
+
+
+
+
+
+ DESCRIPTION
+
+ This manual page documents briefly the
+ &dhpackage;.
+
+ &dhpackage; is an OBDA flat file indexer.
+
+
+
+ OPTIONS
+
+
+
+
+
+
+ Search a database for keywords.
+
+
+
+
+
+
+
+ Only valid with the --search option. Set the search namespace.
+ You can set this option multiple times to specify more than one
+ namespace.
+
+
+
+
+
+
+ Create an index.
+
+
+
+
+
+
+ Specify the directory.
+
+
+
+
+
+
+ Specify the name of the database.
+
+
+
+
+
+
+
+ Set the primary and secondarynamespace of the index. Default
+ primary/secondary namespaces depend on the format of the flatfiles.
+ Only valid with the --create option.
+
+
+
+
+
+
+ Add secondary namespaces to the default specification. You can
+ use this option many times. Only valid with the --create option.
+
+
+
+
+
+
+ Update an index
+
+
+
+
+
+
+ Sort an index. You can set this to a path to an external
+ sorting program, or BUILTIN to use the builtin sort module. This
+ option is only valid with --create (or --update) and --type flat
+ options.
+
+
+
+
+
+
+ Re-read all flatfiles and update whole index. This option is
+ only valid with the --update option.
+
+
+
+
+
+
+ Display the namespaces for an index file.
+
+
+
+
+
+
+ AUTHOR
+
+ This manual page was written by &dhusername; &dhemail; for
+ the &debian; system (but may be used by others). Permission is
+ granted to copy, distribute and/or modify this document under
+ the terms of the &gnu; General Public License, Version 2 any
+ later version published by the Free Software Foundation.
+
+
+ On Debian systems, the complete text of the GNU General Public
+ License can be found in /usr/share/common-licenses/GPL.
+
+
+
+
+
+
+
+
--- bioruby-1.4.0.orig/debian/control
+++ bioruby-1.4.0/debian/control
@@ -0,0 +1,38 @@
+Source: bioruby
+Section: ruby
+Priority: optional
+Maintainer: Debian Med Packaging Team
+Uploaders: Andreas Tille
+DM-Upload-Allowed: yes
+Build-Depends: debhelper (>= 7.1), ruby
+Build-Depends-Indep: docbook-to-man, rdtool
+Standards-Version: 3.8.3
+Homepage: http://www.bioruby.org
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bioruby/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bioruby/trunk/
+
+Package: libbio-ruby1.8
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}, libruby1.8
+Recommends: blast2, ruby1.8
+Description: bioruby tools for computational molecular biology
+ BioRuby project aims to implement an integrated environment for
+ Bioinformatics with Ruby language. Design philosophy of the BioRuby library
+ is KISS (keep it simple and stupid) to maximize the usability and the
+ efficiency for biologists as a daily tool. The project was started in Japan
+ and supported by University of Tokyo (Human Genome Center), Kyoto University
+ (Bioinformatics Center) and the Open Bio Foundation.
+
+Package: libbio-ruby
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}, libbio-ruby1.8
+Description: bioruby tools for computational molecular biology
+ BioRuby project aims to implement an integrated environment for
+ Bioinformatics with Ruby language. Design philosophy of the BioRuby library
+ is KISS (keep it simple and stupid) to maximize the usability and the
+ efficiency for biologists as a daily tool. The project was started in Japan
+ and supported by University of Tokyo (Human Genome Center), Kyoto University
+ (Bioinformatics Center) and the Open Bio Foundation.
+ .
+ This project is a dependency package, which depends on Debian's default Ruby
+ version (currently 1.8.x)
--- bioruby-1.4.0.orig/debian/manpages
+++ bioruby-1.4.0/debian/manpages
@@ -0,0 +1 @@
+*.1
--- bioruby-1.4.0.orig/debian/watch
+++ bioruby-1.4.0/debian/watch
@@ -0,0 +1,3 @@
+version=3
+
+http://bioruby.org/archive/bioruby-(.*)\.tar\.gz
--- bioruby-1.4.0.orig/debian/changelog
+++ bioruby-1.4.0/debian/changelog
@@ -0,0 +1,107 @@
+bioruby (1.4.0-1) unstable; urgency=low
+
+ * New upstream version
+
+ -- Andreas Tille Thu, 21 Jan 2010 11:42:04 +0100
+
+bioruby (1.3.1-1) unstable; urgency=low
+
+ * debian/control:
+ - Group maintenance in Debian Med team
+ - Added myself as uploader
+ - Standards-Version: 3.8.3 (no changes needed)
+ - Debhelper >= 7.1
+ - Homepage and Vcs fileds
+
+ -- Andreas Tille Sun, 04 Oct 2009 09:15:28 +0200
+
+bioruby (1.1.0-1) unstable; urgency=low
+
+ * New upstream version
+ + Bioruby is now distributed under the same terms as ruby itself.
+ This gives you the option of using the GPL or a similar copyleft
+ license. See /usr/share/doc/libbio-ruby/copyright for details on the
+ alternate license.
+ + Lots of new and obsolete classes, see the upstream changelog for details
+ + BioRuby shell rewritten to utilize the rails generators
+ + Many bugfixes
+ * Re-work build system to utilize install.rb instead of my custom rules file
+ + Enable unit tests in the build
+ + Don't hardcode the binary names when hacking off the .rb suffix. Use
+ wildcards and a for loop to rename them
+ + Remove the libbio-ruby1.8.dirs file. The directories get installed by
+ the install.rb now
+ + The docs are built by install.rb now, so don't do custom stuff for them
+ in debian/rules
+ + Move building the manpages to the build-stamp target, rather than the
+ build target
+ + Add ruby to build-depends
+
+ -- David Nusinow Sun, 22 Jul 2007 18:42:39 -0400
+
+bioruby (1.0.0-1) unstable; urgency=low
+
+ * New upstream version
+ * Add the bioruby shell program
+ * Add the Changes-0.7.html doc describing updates since 0.6.x
+ * Bump standards version to 3.7.2.0. No changes needed.
+ * Bump debhelper compat to 5
+ * Move debhelper to build-depends from build-depends-indep
+
+ -- David Nusinow Thu, 17 Aug 2006 00:28:21 +0000
+
+bioruby (0.6.4-1) unstable; urgency=low
+
+ * New upstream release
+ + siRNA designer class is contributed by Itoshi Nikaido.
+ (lib/bio/util/sirna.rb)
+ + fastacmd wrapper is contributed by Shinji Shigenobu.
+ (lib/bio/io/fastacmd.rb)
+ + bl2seq parser is contributed by Tomoaki Nishiyama.
+ (lib/bio/appl/bl2seq/report.rb)
+ + new application execution factory is provided.
+ (lib/bio/command.rb)
+ + FlatFile class can accept Blast results, Spidey, Blat, Sim4 and some
+ KEGG formats (KO, GLYCAN, REACTION)
+ + some methods are added to SPTr class proposed by Luca Pireddu.
+ (lib/bio/db/embl/sptr.rb)
+ + external2go parser is added. (lib/bio/db/go.rb)
+ + improved amino/nucleic data classes to have some handy methods.
+ (lib/bio/data/)
+ + fixed hmmer parser (by Masashi Fujita) and remote execution of blast and
+ fasta using GenomeNet.
+ + some English documentations are added. (doc/)
+ * Re-organize debian/rules handling of docs
+ + Ship new English tutorial and KEGG_API. These are turned to html with rd2
+ + Put document building commands in the build target instead of configure
+ + Add commands to remove generated documents in the clean target
+ + Put package building commands in binary-indep where they belong
+ * Add build-dependency on rdtool to build html docs using rd2
+ * Minor debian/copyright cleanup to get rid of stupid lintian warning about
+ boilerplate
+ * Change Build-Depends to Build-Depends-Indep
+ * Update standards version to 3.6.2. No changes needed.
+ * Add ruby1.8 to recommends for libbio-ruby1.8
+
+ -- David Nusinow Thu, 1 Sep 2005 14:04:35 -0400
+
+bioruby (0.6.2-3) unstable; urgency=low
+
+ * Add watch file
+
+ -- David Nusinow Thu, 7 Apr 2005 22:12:44 -0400
+
+bioruby (0.6.2-2) unstable; urgency=low
+
+ * Depend on libruby1.8 instead of ruby1.8 to bring in line with ruby policy
+ * Add Recommends on blast2 for local blast
+ * Depend on docbook-to-man; closes: #302360
+
+ -- David Nusinow Tue, 1 Feb 2005 00:25:45 -0500
+
+bioruby (0.6.2-1) unstable; urgency=low
+
+ * Initial Release.
+
+ -- David Nusinow Mon, 31 Jan 2005 11:11:55 -0500
+
--- bioruby-1.4.0.orig/debian/br_biofetch.rb.sgml
+++ bioruby-1.4.0/debian/br_biofetch.rb.sgml
@@ -0,0 +1,182 @@
+ manpage.1'. You may view
+ the manual page with: `docbook-to-man manpage.sgml | nroff -man |
+ less'. A typical entry in a Makefile or Makefile.am is:
+
+manpage.1: manpage.sgml
+ docbook-to-man $< > $@
+
+
+ The docbook-to-man binary is found in the docbook-to-man package.
+ Please remember that if you create the nroff version in one of the
+ debian/rules file targets (such as build), you will need to include
+ docbook-to-man in your Build-Depends control field.
+
+ -->
+
+
+ David">
+ Nusinow">
+
+ January 31, 2005">
+
+ 1">
+ dnusinow@debian.org">
+
+ BIORUBY">
+
+
+ Debian">
+ GNU">
+ GPL">
+]>
+
+
+
+
+ &dhemail;
+
+
+ &dhfirstname;
+ &dhsurname;
+
+
+ 2005
+ &dhusername;
+
+ &dhdate;
+
+
+ &dhucpackage;
+
+ &dhsection;
+
+
+ &dhpackage;
+
+ biofetch client
+
+
+
+ &dhpackage;
+
+ server
+ db
+ id
+
+
+
+
+
+
+ DESCRIPTION
+
+ This manual page documents briefly the
+ &dhpackage;.
+
+ &dhpackage; is a very simple biofetch client. You
+ can connect to a biofetch server and retrieve database entries including
+ sequence information.
+
+
+
+ OPTIONS
+
+
+
+
+
+
+ Specify the URL of the BioFetch CGI (default is http://bioruby.org/cgi-bin/biofetch.rb)
+
+
+
+
+
+
+ Use the EBI server at http://www.ebi.ac.uk/cgi-bin/dbfetch
+
+
+
+
+
+
+ Use the BioRuby server at http://bioruby.org/cgi-bin/biofetch.rb
+
+
+
+
+
+
+ Database name. This includes options like refseq, genbank,
+ embl, swissprot, etc. This option depends on which biofetch server
+ you are using.
+
+
+
+
+
+
+ entry id
+
+
+
+
+
+
+ \'raw\' or \'html\' (default is \'raw\')
+
+
+
+
+
+
+ Output format ('default, 'fasta', 'etc')
+
+
+
+
+
+ SEE ALSO
+
+ bar (1), baz (1).
+
+
+
+ AUTHOR
+
+ This manual page was written by &dhusername; &dhemail; for
+ the &debian; system (but may be used by others). Permission is
+ granted to copy, distribute and/or modify this document under
+ the terms of the &gnu; General Public License, Version 2 any
+ later version published by the Free Software Foundation.
+
+
+ On Debian systems, the complete text of the GNU General Public
+ License can be found in /usr/share/common-licenses/GPL.
+
+
+
+
+
+
+
+
--- bioruby-1.4.0.orig/debian/rules
+++ bioruby-1.4.0/debian/rules
@@ -0,0 +1,79 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+RUBYVER = 1.8
+RUBYDIR = usr/lib/ruby
+SITELIBDIR = $(RUBYDIR)/$(RUBYVER)
+PREFIXDIR = $(CURDIR)/debian/libbio-ruby$(RUBYVER)
+
+configure: configure-stamp
+configure-stamp:
+ dh_testdir
+ ruby setup.rb config --prefix=$(PREFIXDIR)/usr --site-ruby-common=$(PREFIXDIR)/$(RUBYDIR) --site-ruby=$(PREFIXDIR)/$(SITELIBDIR)
+ ruby setup.rb setup
+ ruby setup.rb test
+ touch configure-stamp
+
+build: build-stamp
+
+build-stamp: configure-stamp
+ dh_testdir
+ # Build manpages
+ docbook-to-man debian/br_biofetch.rb.sgml > br_biofetch.1
+ docbook-to-man debian/br_bioflat.rb.sgml > br_bioflat.1
+ docbook-to-man debian/br_biogetseq.rb.sgml > br_biogetseq.1
+ docbook-to-man debian/br_pmfetch.rb.sgml > br_pmfetch.1
+ touch build-stamp
+
+clean:
+ dh_testdir
+ dh_testroot
+ rm -f build-stamp configure-stamp
+ dh_clean
+ ruby setup.rb config --prefix=$(CURDIR)/debian/libbio-ruby$(RUBYVER)/usr
+ ruby setup.rb clean
+ # Remove generated documents
+ rm -f br_biofetch.1
+ rm -f br_bioflat.1
+ rm -f br_biogetseq.1
+ rm -f br_pmfetch.1
+
+install: build
+ dh_testdir
+ dh_testroot
+ dh_clean
+ dh_installdirs
+
+ ruby setup.rb install
+ for FILE in `ls $(PREFIXDIR)/usr/bin/*rb`; do \
+ BINNAME=$$(echo $$FILE | sed 's/\.rb$$//'); \
+ mv $$FILE $$BINNAME; \
+ done
+
+ # Install docs
+ dh_installdocs doc etc/bioinformatics/seqdatabase.ini
+ dh_installexamples sample/*
+
+# Build architecture-independent files here.
+binary-indep: build install
+ dh_testdir
+ dh_testroot
+ dh_installchangelogs ChangeLog
+ dh_installdocs
+ dh_installman
+ dh_compress
+ dh_fixperms
+ dh_installdeb
+ dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+# Build architecture-dependent files here.
+binary-arch: build install
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install configure