--- altree-1.0.1.orig/debian/altree.doc-base +++ altree-1.0.1/debian/altree.doc-base @@ -0,0 +1,11 @@ +Document: altree +Title: ALTree: Association and Localisation tests using haplotype phylogenetic Trees +Author: Claire Bardel, Vincent Danjean, Pierre Darly and Emanuelle Guérin +Abstract: This manual covers the installation and usage of ALTree. It provides a + reference for for the `ALTree-convert', `ALTree-add-S' and `ALTree' programs, + as well as explanation about the example files distributed in the + `altree-examples' Debian package. +Section: Science/Biology + +Format: PDF +Files: /usr/share/doc/altree/manual.pdf --- altree-1.0.1.orig/debian/copyright +++ altree-1.0.1/debian/copyright @@ -0,0 +1,32 @@ +Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat?action=recall&rev=139 +Upstream-Author: Claire Bardel +Packaged-By: Vincent Danjean +Packaged-Date: Mon, 25 Jul 2005 22:22:50 +0200 +Original-Source-Location: http://claire.bardel.free.fr/files/altree-1.0.1.tar.gz + +Files: * +Copyright: © 2005-2008 Claire Bardel + © 2005-2007 Vincent Danjean +License: GPL-2+ + This package is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this package; if not, write to the Free Software + Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, + MA 02110-1301, USA. +X-Comment: On Debian systems, the complete text of the GNU General + Public License can be found in `/usr/share/common-licenses/GPL'. + +Files: debian/* +Copyright: © 2005—2008 Vincean Danjean + © 2008 David Paleino + © 2008 Charles Plessy +License: Same as altree --- altree-1.0.1.orig/debian/watch +++ altree-1.0.1/debian/watch @@ -0,0 +1,2 @@ +version=3 +http://claire.bardel.free.fr/files/altree-([[:digit:]].*)\.tar\.gz --- altree-1.0.1.orig/debian/rules +++ altree-1.0.1/debian/rules @@ -0,0 +1,14 @@ +#!/usr/bin/make -f + +DEB_COMPRESS_EXCLUDE := .pdf # The PDF doc will not be compressed + +include /usr/share/cdbs/1/rules/debhelper.mk +include /usr/share/cdbs/1/class/makefile.mk +include /usr/share/cdbs/1/rules/patchsys-quilt.mk +include /usr/share/cdbs/1/class/perlmodule.mk + +build/altree:: + $(MAKE) -C Documentation pdf + +clean:: + $(MAKE) -C Documentation distclean --- altree-1.0.1.orig/debian/control +++ altree-1.0.1/debian/control @@ -0,0 +1,33 @@ +Source: altree +Section: science +Priority: optional +Maintainer: Debian-Med Packaging Team +DM-Upload-Allowed: yes +Uploaders: Charles Plessy , + Vincent Danjean , + David Paleino +Build-Depends: debhelper (>= 5.0.0), quilt, patchutils (>= 0.2.25), cdbs (>= 0.4.27), perl (>= 5.6.0), latex-make, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended +Standards-Version: 3.8.0 +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/altree/trunk/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/altree +Homepage: http://claire.bardel.free.fr/ + +Package: altree +Architecture: any +Conflicts: libcutils-perl, alphy +Replaces: libcutils-perl, alphy +Provides: libcutils-perl, alphy +Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends} +Suggests: altree-examples +Description: program to perform phylogeny based analyses + ALTree was designed to perform phylogeny based analysis: first, + it allows the detection of an association between a candidate gene and + a disease, and second, it enables to make hypothesis about the + susceptibility loci. + +Package: altree-examples +Architecture: all +Recommends: altree (= ${binary:Version}) +Description: example files for ALTree + This package contains the example files for the ALTree package discussed in + its PDF manual. --- altree-1.0.1.orig/debian/altree-examples.docs +++ altree-1.0.1/debian/altree-examples.docs @@ -0,0 +1 @@ +test/* --- altree-1.0.1.orig/debian/compat +++ altree-1.0.1/debian/compat @@ -0,0 +1 @@ +5 --- altree-1.0.1.orig/debian/altree.docs +++ altree-1.0.1/debian/altree.docs @@ -0,0 +1,2 @@ +README +Documentation/manual.pdf --- altree-1.0.1.orig/debian/changelog +++ altree-1.0.1/debian/changelog @@ -0,0 +1,81 @@ +altree (1.0.1-3) unstable; urgency=low + + * debian/control: + - Corrected the VCS information. + - Checked conformance with Policy 3.8.0 (no changes needed). + - Added a new Arch:all package, altree-examples. + * debian/copyright: + - Lifted to the latest version of the proposed machine-readable format. + * manual.pdf: + - Compression prevented by DEB_COMPRESS_EXCLUDE := .pdf in debian/rules. + - Registered in doc-base. + + -- Charles Plessy Sun, 22 Jun 2008 01:37:07 +0900 + +altree (1.0.1-2) unstable; urgency=low + + [ Charles Plessy ] + * Initial release for Debian (Closes: #461506) + * debian/copyright: converted to machine-readable format. + * debian/control: + - Added texlive-lang-french, texlive-latex-recommended + and texlive-latex-extra as build dependencies. + - Updated my email address. + + [ David Paleino ] + * Added debian/watch + * debian/compat and debhelper dependency updated + * debian/control: + - added myself in Uploaders + - Standards-Version is now 3.7.3 + + [ Vincent Danjean ] + * remove unused debian/control.in file + * Fix copyright (and update email addresses) + * Fix build-depends: + + remove debian part of version (thanks lintian) + + change latex-utils to latex-make (always present with this name in + Debian) + * Fix depends: add ${perl:Depends} + * remove empty dir in package (/usr/sbin) + => package lintian clean now + + -- Charles Plessy Mon, 12 May 2008 13:37:03 +0900 + +altree (1.0.1-1) unstable; urgency=low + + * New upstream release + + -- Vincent Danjean Fri, 13 Jan 2006 15:46:52 +0100 + +altree (1.0.0-1) unstable; urgency=low + + * New upstream release + + -- Vincent Danjean Fri, 13 Jan 2006 09:40:02 +0100 + +altree (0.9.2-2) unstable; urgency=low + + * Update FSF address in copyright file + + -- Vincent Danjean Sat, 10 Sep 2005 10:25:23 +0200 + +altree (0.9.2-1) unstable; urgency=low + + * New upstream release + * New upstream name + + -- Vincent Danjean Tue, 2 Aug 2005 19:52:19 +0200 + +alphy (0.9.1d-1) unstable; urgency=low + + * New upstream release + + -- Vincent Danjean Tue, 26 Jul 2005 00:08:40 +0200 + +alphy (0.9.1c-1) unstable; urgency=low + + * Initial release + + -- Vincent Danjean Mon, 25 Jul 2005 22:22:50 +0200 +